Genomic and phenotypic comparison of polyhydroxyalkanoates
producing strains of genus Caldimonas/Schlegelella

J 2023

Genomic and phenotypic comparison of polyhydroxyalkanoates producing strains of genus Caldimonas/Schlegelella

MUSILOVA, Jana, Xenie KOURILOVA, Kristyna HERMANKOVA, Matej BEZDICEK, Anastasiia IEREMENKO et. al.

Základní údaje

Originální název

Genomic and phenotypic comparison of polyhydroxyalkanoates producing strains of genus Caldimonas/Schlegelella

Autoři

MUSILOVA, Jana, Xenie KOURILOVA, Kristyna HERMANKOVA, Matej BEZDICEK, Anastasiia IEREMENKO (804 Ukrajina, domácí), Pavel DVOŘÁK (203 Česká republika, domácí), Stanislav OBRUCA a Karel SEDLAR (garant)

Vydání

Computational and Structural Biotechnology Journal, Elsevier, 2023, 2001-0370

Další údaje

Jazyk

angličtina

Typ výsledku

Článek v odborném periodiku

Obor

20801 Environmental biotechnology

Stát vydavatele

Nizozemské království

Utajení

není předmětem státního či obchodního tajemství

Odkazy

URL

Impakt faktor

Impact factor: 6.000 v roce 2022

Kód RIV

RIV/00216224:14310/23:00133099

Organizační jednotka

Přírodovědecká fakulta

DOI

http://dx.doi.org/10.1016/j.csbj.2023.10.051

UT WoS

001106232100001

Klíčová slova anglicky

Caldimonas; Schlegelella; de novo assembly; PHAs; Next-Generation Industrial Biotechnology; DSM 15264; LMG 21645

Štítky

rivok

Příznaky

Mezinárodní význam, Recenzováno

Změněno: 31. 1. 2024 14:04, Anastasiia Ieremenko, Ph.D.

Anotace

V originále

Polyhydroxyalkanoates (PHAs) have emerged as an environmentally friendly alternative to conventional polyesters. In this study, we present a comprehensive analysis of the genomic and phenotypic characteristics of three non-model thermophilic bacteria known for their ability to produce PHAs: Schlegelella aquatica LMG 23380T, Caldimonas thermodepolymerans DSM 15264, and C. thermodepolymerans LMG 21645 and the results were compared with the type strain C. thermodepolymerans DSM 15344T. We have assembled the first complete genomes of these three bacteria and performed the structural and functional annotation. This analysis has provided valuable insights into the biosynthesis of PHAs and has allowed us to propose a comprehensive scheme of carbohydrate metabolism in the studied bacteria. Through phylogenomic analysis, we have confirmed the synonymity between Caldimonas and Schlegelella genera, and further demonstrated that S. aquatica and S. koreensis, currently classified as orphan species, belong to the Caldimonas genus.

Citovat

MUSILOVA, Jana, Xenie KOURILOVA, Kristyna HERMANKOVA, Matej BEZDICEK, Anastasiia IEREMENKO, Pavel DVOŘÁK, Stanislav OBRUCA a Karel SEDLAR. Genomic and phenotypic comparison of polyhydroxyalkanoates producing strains of genus Caldimonas/Schlegelella. Computational and Structural Biotechnology Journal. Elsevier, 2023, roč. 21, November, s. 5372-5381. ISSN 2001-0370. Dostupné z: https://dx.doi.org/10.1016/j.csbj.2023.10.051.

@article{2362939,
   author = {Musilova, Jana and Kourilova, Xenie and Hermankova, Kristyna and Bezdicek, Matej and Ieremenko, Anastasiia and Dvořák, Pavel and Obruca, Stanislav and Sedlar, Karel},
   article_number = {November},
   doi = {http://dx.doi.org/10.1016/j.csbj.2023.10.051},
   keywords = {Caldimonas; Schlegelella; de novo assembly; PHAs; Next-Generation Industrial Biotechnology; DSM 15264; LMG 21645},
   language = {eng},
   issn = {2001-0370},
   journal = {Computational and Structural Biotechnology Journal},
   title = {Genomic and phenotypic comparison of polyhydroxyalkanoates producing strains of genus Caldimonas/Schlegelella},
   url = {https://www.sciencedirect.com/science/article/pii/S2001037023004075},
   volume = {21},
   year = {2023}
}

TY  - JOUR
ID  - 2362939
AU  - Musilova, Jana - Kourilova, Xenie - Hermankova, Kristyna - Bezdicek, Matej - Ieremenko, Anastasiia - Dvořák, Pavel - Obruca, Stanislav - Sedlar, Karel
PY  - 2023
TI  - Genomic and phenotypic comparison of polyhydroxyalkanoates producing strains of genus Caldimonas/Schlegelella
JF  - Computational and Structural Biotechnology Journal
VL  - 21
IS  - November
SP  - 5372-5381
EP  - 5372-5381
PB  - Elsevier
SN  - 20010370
KW  - Caldimonas
KW  - Schlegelella
KW  - de novo assembly
KW  - PHAs
KW  - Next-Generation Industrial Biotechnology
KW  - DSM 15264
KW  - LMG 21645
UR  - https://www.sciencedirect.com/science/article/pii/S2001037023004075
N2  - Polyhydroxyalkanoates (PHAs) have emerged as an environmentally friendly alternative to conventional polyesters. In this study, we present a comprehensive analysis of the genomic and phenotypic characteristics of three non-model thermophilic bacteria known for their ability to produce PHAs: Schlegelella aquatica LMG 23380T, Caldimonas thermodepolymerans DSM 15264, and C. thermodepolymerans LMG 21645 and the results were compared with the type strain C. thermodepolymerans DSM 15344T. We have assembled the first complete genomes of these three bacteria and performed the structural and functional annotation. This analysis has provided valuable insights into the biosynthesis of PHAs and has allowed us to propose a comprehensive scheme of carbohydrate metabolism in the studied bacteria. Through phylogenomic analysis, we have confirmed the synonymity between Caldimonas and Schlegelella genera, and further demonstrated that S. aquatica and S. koreensis, currently classified as orphan species, belong to the Caldimonas genus.
ER  -

MUSILOVA, Jana, Xenie KOURILOVA, Kristyna HERMANKOVA, Matej BEZDICEK, Anastasiia IEREMENKO, Pavel DVOŘÁK, Stanislav OBRUCA a Karel SEDLAR. Genomic and phenotypic comparison of polyhydroxyalkanoates producing strains of genus Caldimonas/Schlegelella. \textit{Computational and Structural Biotechnology Journal}. Elsevier, 2023, roč.~21, November, s.~5372-5381. ISSN~2001-0370. Dostupné z: https://dx.doi.org/10.1016/j.csbj.2023.10.051.

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