Binding of Fatty Acids to b-Cryptogein: Quantitative
Structure-Activity Relationships and Design of Selective
Protein Mutants.

J 2004

Binding of Fatty Acids to b-Cryptogein: Quantitative Structure-Activity Relationships and Design of Selective Protein Mutants.

DOBES, Petr, Jan KMUNÍČEK, Vladimír MIKEŠ a Jiří DAMBORSKÝ

Základní údaje

Originální název

Binding of Fatty Acids to b-Cryptogein: Quantitative Structure-Activity Relationships and Design of Selective Protein Mutants.

Název česky

Vazba mastných kyselin k b-Cryptogenu:Vztah mezi strukturou a aktivitou a vytvoření selektivních bílkovinných mutantů.

Autoři

DOBES, Petr (203 Česká republika), Jan KMUNÍČEK (203 Česká republika), Vladimír MIKEŠ (203 Česká republika) a Jiří DAMBORSKÝ (203 Česká republika, garant)

Vydání

Journal of Chemical Information and Modeling, USA, 2004, 1549-960X

Další údaje

Jazyk

angličtina

Typ výsledku

Článek v odborném periodiku

Obor

10600 1.6 Biological sciences

Stát vydavatele

Spojené státy

Utajení

není předmětem státního či obchodního tajemství

Odkazy

URL

Kód RIV

RIV/00216224:14310/04:00010577

Organizační jednotka

Přírodovědecká fakulta

UT WoS

000225411300027

Klíčová slova anglicky

QSAR; Protein; Mutants

Štítky

mutants, PROTEIN, QSAR

Změněno: 19. 3. 2010 12:17, prof. Mgr. Jiří Damborský, Dr.

Anotace

ORIG CZ

V originále

Binding of fatty acids to cryptogein, the proteinaceous elicitor from Phytophthora, was studied by using molecular docking and quantitative structure-activity relationships analysis. Fatty acids bind to the groove located inside the cavity of cryptogein. The structure-activity model was constructed for the set of 27 different saturated and unsaturated fatty acids explaining 87% (81% cross-validated) of the quantitative variance in their binding affinity. The difference in binding between saturated and unsaturated fatty acids was described in the model by three electronic descriptors: the energy of the lowest unoccupied molecular orbital, the energy of the highest occupied molecular orbital and the heat of formation. The presence of double bonds in the ligand generally resulted in stronger binding. The difference in binding within the group of saturated fatty acids was explained by two steric descriptors, i.e. ellipsoidal volume and inertia moment of length, and one hydrophobicity descriptor, i.e. lipophility. Developed model predicted strong binding for two biologically important molecules, geranylgeranyol and farnesol playing an important role in plant signalling as lipid anchors of some membrane proteins. Elicitin mutants selectively binding only one type of ligands were designed for future experimental studies.

Česky

Vazba mastných kyselin a cryptogenu- bílkovinné obrany Phytophthora, byla studována použitím molekulového dockingu a analýzou QSAR.

Návaznosti

MSM 143100005, záměr

Název: Strukturně-funkční vztahy biomolekul a jejich role v metabolismu

Investor: Ministerstvo školství, mládeže a tělovýchovy ČR, Strukturně-funkční vztahy biomolekul a jejich role v metabolismu

Citovat

DOBES, Petr, Jan KMUNÍČEK, Vladimír MIKEŠ a Jiří DAMBORSKÝ. Binding of Fatty Acids to b-Cryptogein: Quantitative Structure-Activity Relationships and Design of Selective Protein Mutants. Journal of Chemical Information and Modeling. USA, 2004, roč. 44-6, č. 44, s. 2126-2132. ISSN 1549-960X.

@article{561690,
   author = {Dobes, Petr and Kmuníček, Jan and Mikeš, Vladimír and Damborský, Jiří},
   article_location = {USA},
   article_number = {44},
   keywords = {QSAR; Protein; Mutants},
   language = {eng},
   issn = {1549-960X},
   journal = {Journal of Chemical Information and Modeling},
   title = {Binding of Fatty Acids to b-Cryptogein: Quantitative Structure-Activity Relationships and Design of Selective Protein Mutants.},
   url = {http://ncbr.chemi.muni.cz/~jiri/abstracts/jcim04.html},
   volume = {44-6},
   year = {2004}
}

TY  - JOUR
ID  - 561690
AU  - Dobes, Petr - Kmuníček, Jan - Mikeš, Vladimír - Damborský, Jiří
PY  - 2004
TI  - Binding of Fatty Acids to b-Cryptogein: Quantitative Structure-Activity Relationships and Design of Selective Protein Mutants.
JF  - Journal of Chemical Information and Modeling
VL  - 44-6
IS  - 44
SP  - 2126-2132
EP  - 2126-2132
SN  - 1549960X
KW  - QSAR
KW  - Protein
KW  - Mutants
UR  - http://ncbr.chemi.muni.cz/~jiri/abstracts/jcim04.html
N2  - Binding of fatty acids to cryptogein, the proteinaceous elicitor from Phytophthora, was studied by using molecular docking and quantitative structure-activity relationships analysis. Fatty acids bind to the groove located inside the cavity of cryptogein. The structure-activity model was constructed for the set of 27 different saturated and unsaturated fatty acids explaining 87% (81% cross-validated) of the quantitative variance in their binding affinity. The difference in binding between saturated and unsaturated fatty acids was described in the model by three electronic descriptors: the energy of the lowest unoccupied molecular orbital, the energy of the highest occupied molecular orbital and the heat of formation. The presence of double bonds in the ligand generally resulted in stronger binding. The difference in binding within the group of saturated fatty acids was explained by two steric descriptors, i.e. ellipsoidal volume and inertia moment of length, and one hydrophobicity descriptor, i.e. lipophility. Developed model predicted strong binding for two biologically important molecules, geranylgeranyol and farnesol playing an important role in plant signalling as lipid anchors of some membrane proteins. Elicitin mutants selectively binding only one type of ligands were designed for future experimental studies.
ER  -

DOBES, Petr, Jan KMUNÍČEK, Vladimír MIKEŠ a Jiří DAMBORSKÝ. Binding of Fatty Acids to b-Cryptogein: Quantitative Structure-Activity Relationships and Design of Selective Protein Mutants. \textit{Journal of Chemical Information and Modeling}. USA, 2004, roč.~44-6, č.~44, s.~2126-2132. ISSN~1549-960X.

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