CICADA: Parallelization and Related Problems
KOSINA, Aleš, Zdeněk KŘÍŽ and Jaroslav KOČA. CICADA: Parallelization and Related Problems. In Workshop on Modeling Interactions in Biomolecules II. Praha: Univerzita Karlova, Praha, 2005, p. 51. |
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Basic information | |
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Original name | CICADA: Parallelization and Related Problems |
Name in Czech | CICADA: Parallelizace a přidružené problémy |
Authors | KOSINA, Aleš (203 Czech Republic, guarantor), Zdeněk KŘÍŽ (203 Czech Republic) and Jaroslav KOČA (203 Czech Republic). |
Edition | Praha, Workshop on Modeling Interactions in Biomolecules II, p. 51-51, 2005. |
Publisher | Univerzita Karlova, Praha |
Other information | |
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Original language | English |
Type of outcome | Proceedings paper |
Field of Study | 10600 1.6 Biological sciences |
Country of publisher | Czech Republic |
Confidentiality degree | is not subject to a state or trade secret |
RIV identification code | RIV/00216224:14310/05:00013942 |
Organization unit | Faculty of Science |
Keywords in English | Single Coordinate Driving; Parallelization; Conformational Analysis; result verification |
Tags | conformational analysis, Parallelization, result verification, Single Coordinate Driving |
Changed by | Changed by: Mgr. Zdeněk Kříž, Ph.D., učo 2703. Changed: 22/2/2006 14:12. |
Abstract |
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CICADA programme is based on SCD (Single Coordinate Driving) approach and is used for a comformational analysis and molecular docing of small and middle sized molecules. CICADA programme was parallelized in Master-Slave approach. The programme were extensively tested for the correctness on different computer environment and is showen result independece on number of CPU and eviroment. |
Abstract (in Czech) |
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Program CICADA je postaven na SCD (Single Coordinate Driving) přístupu a je používán pro konformační analýzu malých a středních molekula a pro molekulární docking. Program CICADA byl paralelizován pomocí Master-Slave přístupu. Program byl velmi intenzivně testován na různých výpočetních prostředích a výsledky ukazují nezávislot výpočtů na použitém prostředí a počtu procesorů. |
Links | |
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MSM 143100005, plan (intention) | Name: Strukturně-funkční vztahy biomolekul a jejich role v metabolismu |
Investor: Ministry of Education, Youth and Sports of the CR, Biomolecular Structure-function Relationships and their role in the Metabolism | |
MSM0021622413, plan (intention) | Name: Proteiny v metabolismu a při interakci organismů s prostředím |
Investor: Ministry of Education, Youth and Sports of the CR, Proteins in metabolism and interaction of organisms with the environment |
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