KOZUBEK, Michal, Pavel MATULA, Petr MATULA and David SVOBODA. Analysis of biomedical image data acquired using optical microscopy. In DUŠEK, Ladislav, Jiří HŘEBÍČEK and Jiří JARKOVSKÝ. Proceedings of the 1st International Summer School on Computational Biology. Brno: Masaryk University, 2005, p. 21-28. ISBN 80-210-3907-8.
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Basic information
Original name Analysis of biomedical image data acquired using optical microscopy
Name in Czech Analýza biomedicínských dat získaných pomocí optické mikroskopie
Authors KOZUBEK, Michal (203 Czech Republic, guarantor), Pavel MATULA (203 Czech Republic), Petr MATULA (203 Czech Republic) and David SVOBODA (203 Czech Republic).
Edition Brno, Proceedings of the 1st International Summer School on Computational Biology, p. 21-28, 8 pp. 2005.
Publisher Masaryk University
Other information
Original language English
Type of outcome Proceedings paper
Field of Study 10201 Computer sciences, information science, bioinformatics
Country of publisher Czech Republic
Confidentiality degree is not subject to a state or trade secret
RIV identification code RIV/00216224:14330/05:00012970
Organization unit Faculty of Informatics
ISBN 80-210-3907-8
Keywords in English optical microscopy; image analysis
Tags Image analysis, optical microscopy
Tags International impact, Reviewed
Changed by Changed by: prof. RNDr. Michal Kozubek, Ph.D., učo 3740. Changed: 31/1/2008 10:40.
Abstract
Biomedical image data can be produced by different instruments. In hospitals the most frequent source of such data are computer tomography (CT) of the brain, magnetic resonance imaging (MRI), ultrasound imaging or X-ray imag-ing. For research purposes, however, the most frequent instrument is an optical microscope (typically cells or their components are stained, observed in a fluorescence microscope, their image is recorded using a CCD camera, trans-ferred to computer memory and analysed by computer). Analysis of biomedical image data is a good example of a problem that needs collaboration of experts in biology, mathematics and computer science (or experts with knowl-edge in all these disciplines). In the case of optical microscopy also expertise in physics (optics) is an advantage. An example of a laboratory that attends to the analysis of biomedical image data acquired using optical microscopy and that gathers experts in the above-mentioned disciplines is Laboratory of Optical Microscopy at Masaryk University. This paper summarizes scientific problems solved in this laboratory.
Abstract (in Czech)
Článek se zabývá analýzou biomedicínských dat získaných pomocí optické mikroskopie.
Links
GA202/04/0907, research and development projectName: Cytometrie s vysokým rozlišením na živých buňkách
Investor: Czech Science Foundation, High-resolution cytometry of living cells
IAA5004306, research and development projectName: Struktura lidského genomu
Investor: Academy of Sciences of the Czech Republic, Human genome structure
MSM0021622419, plan (intention)Name: Vysoce paralelní a distribuované výpočetní systémy
Investor: Ministry of Education, Youth and Sports of the CR, Highly Parallel and Distributed Computing Systems
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