Two-surface strategy in electrochemical DNA hybridization
assays: Detection of osmium-labeled target DNA at carbon
electrodes

J 2003

Two-surface strategy in electrochemical DNA hybridization assays: Detection of osmium-labeled target DNA at carbon electrodes

FOJTA, Miroslav, Luděk HAVRAN, Sabina BILLOVÁ, Pavel KOSTEČKA, Michal MASAŘÍK et. al.

Basic information

Original name

Two-surface strategy in electrochemical DNA hybridization assays: Detection of osmium-labeled target DNA at carbon electrodes

Name in Czech

Dvoupovrchová strategie v detekci DNA hybridizace: Detekce osmiem značených sond na uhlíkových elektrodách

Authors

FOJTA, Miroslav (203 Czech Republic), Luděk HAVRAN (203 Czech Republic), Sabina BILLOVÁ (203 Czech Republic), Pavel KOSTEČKA (203 Czech Republic), Michal MASAŘÍK (203 Czech Republic, guarantor) and René KIZEK (203 Czech Republic)

Edition

Electroanalysis, Germany, Weinheim, Wiley-VCH Verlag GmbH & Co. 2003, 1040-0397

Other information

Language

English

Type of outcome

Článek v odborném periodiku

Field of Study

10405 Electrochemistry

Country of publisher

Germany

Confidentiality degree

není předmětem státního či obchodního tajemství

Impact factor

Impact factor: 1.811

Organization unit

Faculty of Science

UT WoS

000182694800012

Keywords in English

osmium-labeled target DNA; magnetic beads; DNA hybridization; electrochemical detection; carbon electrodes

Abstract

ORIG CZ

V originále

Target DNAs, including a 71-mer oligonucleotide, a PCR product and a plasmid DNA, all containing oligo(A) stretches,were hybridized at magnetic Dynabeads oligo(dT)(25) (DBT). The hybridization events were detected using a technique based on chemical modification of the target DNA with a complex of osmium tetroxide with 2,2'-bipyridine (Os, bipy) and voltammetric detection at carbon electrodes. DNA was modified with Os, bipy prior to capture at DBT, at the beads, or after release from the beads. In the latter case, DNA-Os, bipy was detected in the reaction mixture using adsorptive transfer stripping voltammetry involving extraction of unreacted Os, bipy from the electrode by organic solvents. Pre-labeling of the target plasmid DNA and the PCR product with Os, bipy significantly increased the yield of DNA captured at the beads. Tens of femtomoles of both short (the 71-mer oligonucleotide) and long (the 3-kilobase plasmid) target DNAs in a 20-microliter hybridization sample can be easily detected by means of these techniques: Various carbon electrode materials, including pyrolytic graphite (PGE), highly oriented pyrolytic graphite (HOPGE), carbon paste (CPE), glassy carbon and pencil graphite, were tested regarding their suitability for the detection of osmium-labeled DNA. Among them, PGE and HOPGE appeared usable in the measurements of both purified DNA-Os, bipy and its mixtures with unreacted Os, bipy while CPE was suitable for the detection purified osmium-labeled DNA.

In Czech

Práce popisuje elektrochemické stanovení osmiem značených oligonukleotidů a hybridizace DNA na uhlíkových elektrodách.

Citovat

FOJTA, Miroslav, Luděk HAVRAN, Sabina BILLOVÁ, Pavel KOSTEČKA, Michal MASAŘÍK and René KIZEK. Two-surface strategy in electrochemical DNA hybridization assays: Detection of osmium-labeled target DNA at carbon electrodes. Electroanalysis. Germany, Weinheim: Wiley-VCH Verlag GmbH & Co., 2003, vol. 15, 5-6, p. 431-440. ISSN 1040-0397.

@article{721760,
   author = {Fojta, Miroslav and Havran, Luděk and Billová, Sabina and Kostečka, Pavel and Masařík, Michal and Kizek, René},
   article_location = {Germany, Weinheim},
   article_number = {5-6},
   keywords = {osmium-labeled target DNA; magnetic beads; DNA hybridization; electrochemical detection; carbon electrodes},
   language = {eng},
   issn = {1040-0397},
   journal = {Electroanalysis},
   title = {Two-surface strategy in electrochemical DNA hybridization assays: Detection of osmium-labeled target DNA at carbon electrodes},
   volume = {15},
   year = {2003}
}

TY  - JOUR
ID  - 721760
AU  - Fojta, Miroslav - Havran, Luděk - Billová, Sabina - Kostečka, Pavel - Masařík, Michal - Kizek, René
PY  - 2003
TI  - Two-surface strategy in electrochemical DNA hybridization assays: Detection of osmium-labeled target DNA at carbon electrodes
JF  - Electroanalysis
VL  - 15
IS  - 5-6
SP  - 431-440
EP  - 431-440
PB  - Wiley-VCH Verlag GmbH & Co.
SN  - 10400397
KW  - osmium-labeled target DNA
KW  - magnetic beads
KW  - DNA hybridization
KW  - electrochemical detection
KW  - carbon electrodes
N2  - Target DNAs, including a 71-mer oligonucleotide, a PCR product and a plasmid DNA, all containing oligo(A) stretches,were hybridized at magnetic Dynabeads oligo(dT)(25) (DBT). The hybridization events were detected using a technique based on chemical modification of the target DNA with a complex of osmium tetroxide with 2,2'-bipyridine (Os, bipy) and voltammetric detection at carbon electrodes. DNA was modified with Os, bipy prior to capture at DBT, at the beads, or after release from the beads. In the latter case, DNA-Os, bipy was detected in the reaction mixture using adsorptive transfer stripping voltammetry involving extraction of unreacted Os, bipy from the electrode by organic solvents. Pre-labeling of the target plasmid DNA and the PCR product with Os, bipy significantly increased the yield of DNA captured at the beads. Tens of femtomoles of both short (the 71-mer oligonucleotide) and long (the 3-kilobase plasmid) target DNAs in a 20-microliter hybridization sample can be easily detected by means of these techniques: Various carbon electrode materials, including pyrolytic graphite (PGE), highly oriented pyrolytic graphite (HOPGE), carbon paste (CPE), glassy carbon and pencil graphite, were tested regarding their suitability for the detection of osmium-labeled DNA. Among them, PGE and HOPGE appeared usable in the measurements of both purified DNA-Os, bipy and its mixtures with unreacted Os, bipy while CPE was suitable for the detection purified osmium-labeled DNA.
ER  -

FOJTA, Miroslav, Luděk HAVRAN, Sabina BILLOVÁ, Pavel KOSTEČKA, Michal MASAŘÍK and René KIZEK. Two-surface strategy in electrochemical DNA hybridization assays: Detection of osmium-labeled target DNA at carbon electrodes. \textit{Electroanalysis}. Germany, Weinheim: Wiley-VCH Verlag GmbH \&{} Co., 2003, vol.~15, 5-6, p.~431-440. ISSN~1040-0397.

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