2007
Experimental design in intraspecific organelle DNA sequence studies III: statistical measures of sampling success
HOLT, Jason A, Sierra Dawn STONEBERG HOLT a Petr BUREŠZákladní údaje
Originální název
Experimental design in intraspecific organelle DNA sequence studies III: statistical measures of sampling success
Název česky
Experimental design in intraspecific organelle DNA sequence studies III: statistical measures of sampling success
Autoři
HOLT, Jason A (840 Spojené státy), Sierra Dawn STONEBERG HOLT (840 Spojené státy) a Petr BUREŠ (203 Česká republika, garant, domácí)
Vydání
Taxon, Vienna, International Assoc. for Plant Taxonomy, 2007, 0040-0262
Další údaje
Jazyk
angličtina
Typ výsledku
Článek v odborném periodiku
Obor
10600 1.6 Biological sciences
Stát vydavatele
Rakousko
Utajení
není předmětem státního či obchodního tajemství
Impakt faktor
Impact factor: 2.524
Kód RIV
RIV/00216224:14310/07:00022667
Organizační jednotka
Přírodovědecká fakulta
UT WoS
000249247400020
Klíčová slova anglicky
bulking; haplotype frequency confidence intervals; inclusion-exclusion principle; intraspecific sequence studies; phylogeography; proportion estimates
Štítky
Příznaky
Mezinárodní význam, Recenzováno
Změněno: 21. 4. 2011 12:47, prof. RNDr. Petr Bureš, Ph.D.
V originále
Statistical methods are proposed for analyzing the experimental design, preliminary results, and final results of phylogenetic studies of organelle DNA sequence at low taxonomic levels. Such studies require sampling numerous individuals, many of which share identical haplotypes. The proportions of the haplotypes sampled can help answer the following questions: (1) Is one haplotype so dominant that the particular DNA region is without meaningful variation within the scope of the study? (2) Were all prevalent haplotypes found? (3) What are the proportions of each haplotype within the studied group? (4) What percentage of the studied group can be confidently asserted to belong to the haplotypes that were found? Examples are given in which the statistics techniques are applied to data drawn from the botanical literature. Tables are included as a quick reference for the researcher who wishes to circumvent calculation. A Microsoft Excel 2000 spreadsheet (titled HaploPro.xls) for performing some of the more complicated calculations is offered online. Finally, the limitations of these methods and their applicability to nuclear DNA and other characters studies are discussed.
Česky
Statistical methods are proposed for analyzing the experimental design, preliminary results, and final results of phylogenetic studies of organelle DNA sequence at low taxonomic levels. Such studies require sampling numerous individuals, many of which share identical haplotypes. The proportions of the haplotypes sampled can help answer the following questions: (1) Is one haplotype so dominant that the particular DNA region is without meaningful variation within the scope of the study? (2) Were all prevalent haplotypes found? (3) What are the proportions of each haplotype within the studied group? (4) What percentage of the studied group can be confidently asserted to belong to the haplotypes that were found? Examples are given in which the statistics techniques are applied to data drawn from the botanical literature. Tables are included as a quick reference for the researcher who wishes to circumvent calculation. A Microsoft Excel 2000 spreadsheet (titled HaploPro.xls) for performing some of the more complicated calculations is offered online. Finally, the limitations of these methods and their applicability to nuclear DNA and other characters studies are discussed.
Návaznosti
| LC06073, projekt VaV |
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| MSM0021622416, záměr |
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