Screening ethnically diverse human embryonic stem cells
identifies a chromosome 20 minimal amplicon conferring growth
advantage

J 2011

Screening ethnically diverse human embryonic stem cells identifies a chromosome 20 minimal amplicon conferring growth advantage

AMPS, Katherine, Peter W. ANDREWS, George ANYFANTIS, Lyle ARMSTRONG, Stuart AVERY et. al.

Základní údaje

Originální název

Screening ethnically diverse human embryonic stem cells identifies a chromosome 20 minimal amplicon conferring growth advantage

Autoři

AMPS, Katherine (826 Velká Británie a Severní Irsko, garant), Peter W. ANDREWS (826 Velká Británie a Severní Irsko), George ANYFANTIS (826 Velká Británie a Severní Irsko), Lyle ARMSTRONG (826 Velká Británie a Severní Irsko), Stuart AVERY (702 Singapur), Hossein BAHARVAND (364 Írán), Julie BAKER (840 Spojené státy), Duncan BAKER (826 Velká Británie a Severní Irsko), Maria B. MUNOZ (826 Velká Británie a Severní Irsko), Stephen BEIL (840 Spojené státy), Nissim BENVENISTY (840 Spojené státy), Dalit BEN-YOSEF (376 Izrael), Juan-Carlos BIANCOTTI (840 Spojené státy), Alexis BOSMAN (756 Švýcarsko), Romulo Martin BRENA (840 Spojené státy), Daniel BRISON (826 Velká Británie a Severní Irsko), Gunilla CAISANDER (752 Švédsko), Maria V. CAMARASA (826 Velká Británie a Severní Irsko), Jieming CHEN (702 Singapur), Eric CHIAO (840 Spojené státy), Young Min CHOI (410 Korejská republika), Andre B. H. CHOO (702 Singapur), Daniel COLLINS (826 Velká Británie a Severní Irsko), Alan COLMAN (702 Singapur), Jeremy M. CROOK (36 Austrálie), George Q. DALEY (840 Spojené státy), Anne DALTON (826 Velká Británie a Severní Irsko), Paul A. DE SOUSA (826 Velká Británie a Severní Irsko), Chris DENNING (826 Velká Británie a Severní Irsko), Janet DOWNIE (826 Velká Británie a Severní Irsko), Petr DVOŘÁK (203 Česká republika, domácí), Karen D. MONTGOMERY (840 Spojené státy), Anis FEKI (756 Švýcarsko), Angela FORD (826 Velká Británie a Severní Irsko), Victoria FOX (840 Spojené státy), Ana M. FRAGA (76 Brazílie), Tzvia FRUMKIN (376 Izrael), Lin GE (156 Čína), Paul J. GOKHALE (826 Velká Británie a Severní Irsko), Tamar GOLAN-LEV (376 Izrael), Hamid GOURABI (364 Írán), Michal GROPP (376 Izrael), Guangxiu LU (156 Čína), Aleš HAMPL (203 Česká republika, domácí), Katie HARRON (826 Velká Británie a Severní Irsko), Lyn HEALY (826 Velká Británie a Severní Irsko), Wishva HERATH (702 Singapur), Frida HOLM (752 Švédsko), Outi HOVATTA (752 Švédsko), Johan HYLLNER (752 Švédsko), Maneesha S. INAMDAR (356 Indie), Astrid Kresentia IRWANTO (702 Singapur), Tetsuya ISHII (392 Japonsko), Marisa JACONI (756 Švýcarsko), Ying JIN (156 Čína), Susan KIMBER (826 Velká Británie a Severní Irsko), Sergey KISELEV (643 Rusko), Barbara B. KNOWLES (702 Singapur), Oded KOPPER (376 Izrael), Valeri KUKHARENKO (840 Spojené státy), Anver KULIEV (840 Spojené státy), Maria A. LAGARKOVA (643 Rusko), Peter W. LAIRD (840 Spojené státy), Majlinda LAKO (826 Velká Británie a Severní Irsko), Andrew L. LASLETT (36 Austrálie), Neta LAVON (840 Spojené státy), Dong Ryul LEE (410 Korejská republika), Jeoung Eun LEE (410 Korejská republika), Chunliang LI (156 Čína), Linda S. LIM (702 Singapur), Tenneille E. LUDWIG (840 Spojené státy), Yu MA (156 Čína), Edna MALTBY (826 Velká Británie a Severní Irsko), Ileana MATEIZEL (56 Belgie), Yoav MAYSHAR (376 Izrael), Maria MILEIKOVSKY (124 Kanada), Stephen L. MINGER (826 Velká Británie a Severní Irsko), Takamichi MIYAZAKI (392 Japonsko), Shin Yong MOON (410 Korejská republika), Harry MOORE (826 Velká Británie a Severní Irsko), Christine MUMMERY (528 Nizozemské království), Andras NAGY (124 Kanada), Norio NAKATSUJI (392 Japonsko), Kavita NARWANI (840 Spojené státy), Steve K. W. OH (702 Singapur), Sun Kyung OH (410 Korejská republika), Cia OLSON (246 Finsko), Timo OTONKOSKI (246 Finsko), Fei PAN (840 Spojené státy), In-Hyun PARK (840 Spojené státy), Steve PELLS (826 Velká Británie a Severní Irsko), Martin F. PERA (826 Velká Británie a Severní Irsko), Lygia V. PEREIRA (76 Brazílie), Ouyang QI (156 Čína), Grace Selva RAJ (702 Singapur), Benjamin REUBINOFF (376 Izrael), Alan ROBINS (840 Spojené státy), Paul ROBSON (702 Singapur), Janet ROSSANT (124 Kanada), Ghasem H. SALEKDEH (840 Spojené státy), Claudia SPITS (56 Belgie), Thomas C. SCHULZ (840 Spojené státy), Karen SERMON (56 Belgie), Jameelah Sheik MOHAMED (702 Singapur), Hui SHEN (840 Spojené státy), Eric SHERRER (840 Spojené státy), Kuldip SIDHU (702 Singapur), Shirani SIVARAJAH (36 Austrálie), Heli SKOTTMAN (246 Finsko), G. STACEY (840 Spojené státy), R. STREHL (840 Spojené státy), N. STRELCHENKO (840 Spojené státy), H. SUEMORI (840 Spojené státy), B. SUN (840 Spojené státy), R. SUURONEN (840 Spojené státy), K. TAKAHASHI (840 Spojené státy), T. TUURI (840 Spojené státy), P. VENU (840 Spojené státy), Y. VERLINSKY (840 Spojené státy), D. WARD-VAN OOSTWAARD (840 Spojené státy), D. WEISENBERGER (840 Spojené státy), Y. WU (840 Spojené státy), S. YAMANAKA (840 Spojené státy), L. YOUNG (840 Spojené státy) a Q. ZHOU (840 Spojené státy)

Vydání

Nature Biotechnology, 2011, 1087-0156

Další údaje

Jazyk

angličtina

Typ výsledku

Článek v odborném periodiku

Obor

Biotechnologie a bionika

Stát vydavatele

Spojené státy

Utajení

není předmětem státního či obchodního tajemství

Impakt faktor

Impact factor: 23.268

Kód RIV

RIV/00216224:14110/11:00055032

Organizační jednotka

Lékařská fakulta

DOI

http://dx.doi.org/10.1038/nbt.2051

UT WoS

000298038700025

Klíčová slova anglicky

COMPARATIVE GENOMIC HYBRIDIZATION; COPY NUMBER VARIATION; HUMAN ES CELLS; DNA-SEQUENCE; IN-VIVO; CULTURE; LINES; TUMORS; PLURIPOTENCY; GENES

Příznaky

Mezinárodní význam

Změněno: 1. 8. 2013 10:48, Ing. Mgr. Věra Pospíšilíková

Anotace

V originále

The International Stem Cell Initiative analyzed 125 human embryonic stem (ES) cell lines and 11 induced pluripotent stem (iPS) cell lines, from 38 laboratories worldwide, for genetic changes occurring during culture. Most lines were analyzed at an early and late passage. Single-nucleotide polymorphism (SNP) analysis revealed that they included representatives of most major ethnic groups. Most lines remained karyotypically normal, but there was a progressive tendency to acquire changes on prolonged culture, commonly affecting chromosomes 1, 12, 17 and 20. DNA methylation patterns changed haphazardly with no link to time in culture. Structural variants, determined from the SNP arrays, also appeared sporadically. No common variants related to culture were observed on chromosomes 1, 12 and 17, but a minimal amplicon in chromosome 20q11.21, including three genes expressed in human ES cells, ID1, BCL2L1 and HM13, occurred in >20% of the lines. Of these genes, BCL2L1 is a strong candidate for driving culture adaptation of ES cells.

Citovat

AMPS, Katherine, Peter W. ANDREWS, George ANYFANTIS, Lyle ARMSTRONG, Stuart AVERY, Hossein BAHARVAND, Julie BAKER, Duncan BAKER, Maria B. MUNOZ, Stephen BEIL, Nissim BENVENISTY, Dalit BEN-YOSEF, Juan-Carlos BIANCOTTI, Alexis BOSMAN, Romulo Martin BRENA, Daniel BRISON, Gunilla CAISANDER, Maria V. CAMARASA, Jieming CHEN, Eric CHIAO, Young Min CHOI, Andre B. H. CHOO, Daniel COLLINS, Alan COLMAN, Jeremy M. CROOK, George Q. DALEY, Anne DALTON, Paul A. DE SOUSA, Chris DENNING, Janet DOWNIE, Petr DVOŘÁK, Karen D. MONTGOMERY, Anis FEKI, Angela FORD, Victoria FOX, Ana M. FRAGA, Tzvia FRUMKIN, Lin GE, Paul J. GOKHALE, Tamar GOLAN-LEV, Hamid GOURABI, Michal GROPP, Guangxiu LU, Aleš HAMPL, Katie HARRON, Lyn HEALY, Wishva HERATH, Frida HOLM, Outi HOVATTA, Johan HYLLNER, Maneesha S. INAMDAR, Astrid Kresentia IRWANTO, Tetsuya ISHII, Marisa JACONI, Ying JIN, Susan KIMBER, Sergey KISELEV, Barbara B. KNOWLES, Oded KOPPER, Valeri KUKHARENKO, Anver KULIEV, Maria A. LAGARKOVA, Peter W. LAIRD, Majlinda LAKO, Andrew L. LASLETT, Neta LAVON, Dong Ryul LEE, Jeoung Eun LEE, Chunliang LI, Linda S. LIM, Tenneille E. LUDWIG, Yu MA, Edna MALTBY, Ileana MATEIZEL, Yoav MAYSHAR, Maria MILEIKOVSKY, Stephen L. MINGER, Takamichi MIYAZAKI, Shin Yong MOON, Harry MOORE, Christine MUMMERY, Andras NAGY, Norio NAKATSUJI, Kavita NARWANI, Steve K. W. OH, Sun Kyung OH, Cia OLSON, Timo OTONKOSKI, Fei PAN, In-Hyun PARK, Steve PELLS, Martin F. PERA, Lygia V. PEREIRA, Ouyang QI, Grace Selva RAJ, Benjamin REUBINOFF, Alan ROBINS, Paul ROBSON, Janet ROSSANT, Ghasem H. SALEKDEH, Claudia SPITS, Thomas C. SCHULZ, Karen SERMON, Jameelah Sheik MOHAMED, Hui SHEN, Eric SHERRER, Kuldip SIDHU, Shirani SIVARAJAH, Heli SKOTTMAN, G. STACEY, R. STREHL, N. STRELCHENKO, H. SUEMORI, B. SUN, R. SUURONEN, K. TAKAHASHI, T. TUURI, P. VENU, Y. VERLINSKY, D. WARD-VAN OOSTWAARD, D. WEISENBERGER, Y. WU, S. YAMANAKA, L. YOUNG a Q. ZHOU. Screening ethnically diverse human embryonic stem cells identifies a chromosome 20 minimal amplicon conferring growth advantage. Nature Biotechnology. 2011, roč. 29, č. 12, s. 1132-1144. ISSN 1087-0156. Dostupné z: https://dx.doi.org/10.1038/nbt.2051.

@article{967076,
   author = {Amps, Katherine and Andrews, Peter W. and Anyfantis, George and Armstrong, Lyle and Avery, Stuart and Baharvand, Hossein and Baker, Julie and Baker, Duncan and Munoz, Maria B. and Beil, Stephen and Benvenisty, Nissim and BenandYosef, Dalit and Biancotti, JuanandCarlos and Bosman, Alexis and Brena, Romulo Martin and Brison, Daniel and Caisander, Gunilla and Camarasa, Maria V. and Chen, Jieming and Chiao, Eric and Choi, Young Min and Choo, Andre B. H. and Collins, Daniel and Colman, Alan and Crook, Jeremy M. and Daley, George Q. and Dalton, Anne and De Sousa, Paul A. and Denning, Chris and Downie, Janet and Dvořák, Petr and Montgomery, Karen D. and Feki, Anis and Ford, Angela and Fox, Victoria and Fraga, Ana M. and Frumkin, Tzvia and Ge, Lin and Gokhale, Paul J. and GolanandLev, Tamar and Gourabi, Hamid and Gropp, Michal and Lu, Guangxiu and Hampl, Aleš and Harron, Katie and Healy, Lyn and Herath, Wishva and Holm, Frida and Hovatta, Outi and Hyllner, Johan and Inamdar, Maneesha S. and Irwanto, Astrid Kresentia and Ishii, Tetsuya and Jaconi, Marisa and Jin, Ying and Kimber, Susan and Kiselev, Sergey and Knowles, Barbara B. and Kopper, Oded and Kukharenko, Valeri and Kuliev, Anver and Lagarkova, Maria A. and Laird, Peter W. and Lako, Majlinda and Laslett, Andrew L. and Lavon, Neta and Lee, Dong Ryul and Lee, Jeoung Eun and Li, Chunliang and Lim, Linda S. and Ludwig, Tenneille E. and Ma, Yu and Maltby, Edna and Mateizel, Ileana and Mayshar, Yoav and Mileikovsky, Maria and Minger, Stephen L. and Miyazaki, Takamichi and Moon, Shin Yong and Moore, Harry and Mummery, Christine and Nagy, Andras and Nakatsuji, Norio and Narwani, Kavita and Oh, Steve K. W. and Oh, Sun Kyung and Olson, Cia and Otonkoski, Timo and Pan, Fei and Park, InandHyun and Pells, Steve and Pera, Martin F. and Pereira, Lygia V. and Qi, Ouyang and Raj, Grace Selva and Reubinoff, Benjamin and Robins, Alan and Robson, Paul and Rossant, Janet and Salekdeh, Ghasem H. and Spits, Claudia and Schulz, Thomas C. and Sermon, Karen and Mohamed, Jameelah Sheik and Shen, Hui and Sherrer, Eric and Sidhu, Kuldip and Sivarajah, Shirani and Skottman, Heli and Stacey, G. and Strehl, R. and Strelchenko, N. and Suemori, H. and Sun, B. and Suuronen, R. and Takahashi, K. and Tuuri, T. and Venu, P. and Verlinsky, Y. and Wardandvan Oostwaard, D. and Weisenberger, D. and Wu, Y. and Yamanaka, S. and Young, L. and Zhou, Q.},
   article_number = {12},
   doi = {http://dx.doi.org/10.1038/nbt.2051},
   keywords = {COMPARATIVE GENOMIC HYBRIDIZATION; COPY NUMBER VARIATION; HUMAN ES CELLS; DNA-SEQUENCE; IN-VIVO; CULTURE; LINES; TUMORS; PLURIPOTENCY; GENES},
   language = {eng},
   issn = {1087-0156},
   journal = {Nature Biotechnology},
   title = {Screening ethnically diverse human embryonic stem cells identifies a chromosome 20 minimal amplicon conferring growth advantage},
   volume = {29},
   year = {2011}
}

TY  - JOUR
ID  - 967076
AU  - Amps, Katherine - Andrews, Peter W. - Anyfantis, George - Armstrong, Lyle - Avery, Stuart - Baharvand, Hossein - Baker, Julie - Baker, Duncan - Munoz, Maria B. - Beil, Stephen - Benvenisty, Nissim - Ben-Yosef, Dalit - Biancotti, Juan-Carlos - Bosman, Alexis - Brena, Romulo Martin - Brison, Daniel - Caisander, Gunilla - Camarasa, Maria V. - Chen, Jieming - Chiao, Eric - Choi, Young Min - Choo, Andre B. H. - Collins, Daniel - Colman, Alan - Crook, Jeremy M. - Daley, George Q. - Dalton, Anne - De Sousa, Paul A. - Denning, Chris - Downie, Janet - Dvořák, Petr - Montgomery, Karen D. - Feki, Anis - Ford, Angela - Fox, Victoria - Fraga, Ana M. - Frumkin, Tzvia - Ge, Lin - Gokhale, Paul J. - Golan-Lev, Tamar - Gourabi, Hamid - Gropp, Michal - Lu, Guangxiu - Hampl, Aleš - Harron, Katie - Healy, Lyn - Herath, Wishva - Holm, Frida - Hovatta, Outi - Hyllner, Johan - Inamdar, Maneesha S. - Irwanto, Astrid Kresentia - Ishii, Tetsuya - Jaconi, Marisa - Jin, Ying - Kimber, Susan - Kiselev, Sergey - Knowles, Barbara B. - Kopper, Oded - Kukharenko, Valeri - Kuliev, Anver - Lagarkova, Maria A. - Laird, Peter W. - Lako, Majlinda - Laslett, Andrew L. - Lavon, Neta - Lee, Dong Ryul - Lee, Jeoung Eun - Li, Chunliang - Lim, Linda S. - Ludwig, Tenneille E. - Ma, Yu - Maltby, Edna - Mateizel, Ileana - Mayshar, Yoav - Mileikovsky, Maria - Minger, Stephen L. - Miyazaki, Takamichi - Moon, Shin Yong - Moore, Harry - Mummery, Christine - Nagy, Andras - Nakatsuji, Norio - Narwani, Kavita - Oh, Steve K. W. - Oh, Sun Kyung - Olson, Cia - Otonkoski, Timo - Pan, Fei - Park, In-Hyun - Pells, Steve - Pera, Martin F. - Pereira, Lygia V. - Qi, Ouyang - Raj, Grace Selva - Reubinoff, Benjamin - Robins, Alan - Robson, Paul - Rossant, Janet - Salekdeh, Ghasem H. - Spits, Claudia - Schulz, Thomas C. - Sermon, Karen - Mohamed, Jameelah Sheik - Shen, Hui - Sherrer, Eric - Sidhu, Kuldip - Sivarajah, Shirani - Skottman, Heli - Stacey, G. - Strehl, R. - Strelchenko, N. - Suemori, H. - Sun, B. - Suuronen, R. - Takahashi, K. - Tuuri, T. - Venu, P. - Verlinsky, Y. - Ward-van Oostwaard, D. - Weisenberger, D. - Wu, Y. - Yamanaka, S. - Young, L. - Zhou, Q.
PY  - 2011
TI  - Screening ethnically diverse human embryonic stem cells identifies a chromosome 20 minimal amplicon conferring growth advantage
JF  - Nature Biotechnology
VL  - 29
IS  - 12
SP  - 1132-1144
EP  - 1132-1144
SN  - 10870156
KW  - COMPARATIVE GENOMIC HYBRIDIZATION
KW  - COPY NUMBER VARIATION
KW  - HUMAN ES CELLS
KW  - DNA-SEQUENCE
KW  - IN-VIVO
KW  - CULTURE
KW  - LINES
KW  - TUMORS
KW  - PLURIPOTENCY
KW  - GENES
N2  - The International Stem Cell Initiative analyzed 125 human embryonic stem (ES) cell lines and 11 induced pluripotent stem (iPS) cell lines, from 38 laboratories worldwide, for genetic changes occurring during culture. Most lines were analyzed at an early and late passage. Single-nucleotide polymorphism (SNP) analysis revealed that they included representatives of most major ethnic groups. Most lines remained karyotypically normal, but there was a progressive tendency to acquire changes on prolonged culture, commonly affecting chromosomes 1, 12, 17 and 20. DNA methylation patterns changed haphazardly with no link to time in culture. Structural variants, determined from the SNP arrays, also appeared sporadically. No common variants related to culture were observed on chromosomes 1, 12 and 17, but a minimal amplicon in chromosome 20q11.21, including three genes expressed in human ES cells, ID1, BCL2L1 and HM13, occurred in >20% of the lines. Of these genes, BCL2L1 is a strong candidate for driving culture adaptation of ES cells.
ER  -

AMPS, Katherine, Peter W. ANDREWS, George ANYFANTIS, Lyle ARMSTRONG, Stuart AVERY, Hossein BAHARVAND, Julie BAKER, Duncan BAKER, Maria B. MUNOZ, Stephen BEIL, Nissim BENVENISTY, Dalit BEN-YOSEF, Juan-Carlos BIANCOTTI, Alexis BOSMAN, Romulo Martin BRENA, Daniel BRISON, Gunilla CAISANDER, Maria V. CAMARASA, Jieming CHEN, Eric CHIAO, Young Min CHOI, Andre B. H. CHOO, Daniel COLLINS, Alan COLMAN, Jeremy M. CROOK, George Q. DALEY, Anne DALTON, Paul A. DE SOUSA, Chris DENNING, Janet DOWNIE, Petr DVOŘÁK, Karen D. MONTGOMERY, Anis FEKI, Angela FORD, Victoria FOX, Ana M. FRAGA, Tzvia FRUMKIN, Lin GE, Paul J. GOKHALE, Tamar GOLAN-LEV, Hamid GOURABI, Michal GROPP, Guangxiu LU, Aleš HAMPL, Katie HARRON, Lyn HEALY, Wishva HERATH, Frida HOLM, Outi HOVATTA, Johan HYLLNER, Maneesha S. INAMDAR, Astrid Kresentia IRWANTO, Tetsuya ISHII, Marisa JACONI, Ying JIN, Susan KIMBER, Sergey KISELEV, Barbara B. KNOWLES, Oded KOPPER, Valeri KUKHARENKO, Anver KULIEV, Maria A. LAGARKOVA, Peter W. LAIRD, Majlinda LAKO, Andrew L. LASLETT, Neta LAVON, Dong Ryul LEE, Jeoung Eun LEE, Chunliang LI, Linda S. LIM, Tenneille E. LUDWIG, Yu MA, Edna MALTBY, Ileana MATEIZEL, Yoav MAYSHAR, Maria MILEIKOVSKY, Stephen L. MINGER, Takamichi MIYAZAKI, Shin Yong MOON, Harry MOORE, Christine MUMMERY, Andras NAGY, Norio NAKATSUJI, Kavita NARWANI, Steve K. W. OH, Sun Kyung OH, Cia OLSON, Timo OTONKOSKI, Fei PAN, In-Hyun PARK, Steve PELLS, Martin F. PERA, Lygia V. PEREIRA, Ouyang QI, Grace Selva RAJ, Benjamin REUBINOFF, Alan ROBINS, Paul ROBSON, Janet ROSSANT, Ghasem H. SALEKDEH, Claudia SPITS, Thomas C. SCHULZ, Karen SERMON, Jameelah Sheik MOHAMED, Hui SHEN, Eric SHERRER, Kuldip SIDHU, Shirani SIVARAJAH, Heli SKOTTMAN, G. STACEY, R. STREHL, N. STRELCHENKO, H. SUEMORI, B. SUN, R. SUURONEN, K. TAKAHASHI, T. TUURI, P. VENU, Y. VERLINSKY, D. WARD-VAN OOSTWAARD, D. WEISENBERGER, Y. WU, S. YAMANAKA, L. YOUNG a Q. ZHOU. Screening ethnically diverse human embryonic stem cells identifies a chromosome 20 minimal amplicon conferring growth advantage. \textit{Nature Biotechnology}. 2011, roč.~29, č.~12, s.~1132-1144. ISSN~1087-0156. Dostupné z: https://dx.doi.org/10.1038/nbt.2051.

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