Whole Genome Sequences of Three Treponema pallidum ssp.
pertenue Strains: Yaws and Syphilis Treponemes Differ in Less
than 0.2% of the Genome Sequence

J 2012

Whole Genome Sequences of Three Treponema pallidum ssp. pertenue Strains: Yaws and Syphilis Treponemes Differ in Less than 0.2% of the Genome Sequence

ČEJKOVÁ, Darina, Marie ZOBANÍKOVÁ, Lei CHEN, Petra POSPÍŠILOVÁ, Michal STROUHAL et. al.

Základní údaje

Originální název

Whole Genome Sequences of Three Treponema pallidum ssp. pertenue Strains: Yaws and Syphilis Treponemes Differ in Less than 0.2% of the Genome Sequence

Autoři

ČEJKOVÁ, Darina (203 Česká republika, domácí), Marie ZOBANÍKOVÁ (203 Česká republika, domácí), Lei CHEN (840 Spojené státy), Petra POSPÍŠILOVÁ (203 Česká republika, domácí), Michal STROUHAL (203 Česká republika, domácí), Xiang QIN (840 Spojené státy), Lenka MIKALOVÁ (203 Česká republika, domácí), Stephen J. NORRIS (840 Spojené státy), Donna M. MUZNY (840 Spojené státy), Richard A. GIBBS (840 Spojené státy), Lucinda L. FULTON (840 Spojené státy), Erica SODERGREN (840 Spojené státy), George M. WEINSTOCK (840 Spojené státy) a David ŠMAJS (203 Česká republika, garant, domácí)

Vydání

PLoS Neglected Tropical Diseases, San Francisco, Public Library of Science, 2012, 1935-2727

Další údaje

Jazyk

angličtina

Typ výsledku

Článek v odborném periodiku

Obor

10600 1.6 Biological sciences

Stát vydavatele

Spojené státy

Utajení

není předmětem státního či obchodního tajemství

Odkazy

Art.No. e1471

Impakt faktor

Impact factor: 4.716 v roce 2011

Kód RIV

RIV/00216224:14110/12:00081800

Organizační jednotka

Lékařská fakulta

DOI

http://dx.doi.org/10.1371/journal.pntd.0001471

UT WoS

000300416100021

Klíčová slova anglicky

Treponema pallidum; Syphilis; Genome; Yaws

Příznaky

Mezinárodní význam, Recenzováno

Změněno: 29. 4. 2016 10:10, Ing. Mgr. Věra Pospíšilíková

Anotace

V originále

Spirochete Treponema pallidum ssp. pertenue (TPE) is the causative agent of yaws while strains of Treponema pallidum ssp. pallidum (TPA) cause syphilis. Both yaws and syphilis are distinguished on the basis of epidemiological characteristics and clinical symptoms. Neither treponeme can reproduce outside the host organism, which precludes the use of standard molecular biology techniques used to study cultivable pathogens. In this study, we determined high quality whole genome sequences of TPE strains and compared them to known genetic information for T. pallidum ssp. pallidum strains. The genome structure was identical in all three TPE strains and also between TPA and TPE strains. The TPE genome length ranged between 1,139,330 bp and 1,139,744 bp. The overall sequence identity between TPA and TPE genomes was 99.8%, indicating that the two pathogens are extremely closely related. A set of 34 TPE genes (3.5%) encoded proteins containing six or more amino acid replacements or other major sequence changes. These genes more often belonged to the group of genes with predicted virulence and unknown functions suggesting their involvement in infection differences between yaws and syphilis.

Návaznosti

GA310/07/0321, projekt VaV

Název: Komparativní genomové sekvencování patogenních treponem a transkriptomová analýza T. pallidum ssp. pallidum

Investor: Grantová agentura ČR, Komparativní genomové sekvencování patogenních treponem a transkriptomová analýza T. pallidum ssp. pallidum

MSM0021622415, záměr

Název: Molekulární podstata buněčných a tkáňových regulací

Investor: Ministerstvo školství, mládeže a tělovýchovy ČR, Molekulární podstata buněčných a tkáňových regulací

Citovat

ČEJKOVÁ, Darina, Marie ZOBANÍKOVÁ, Lei CHEN, Petra POSPÍŠILOVÁ, Michal STROUHAL, Xiang QIN, Lenka MIKALOVÁ, Stephen J. NORRIS, Donna M. MUZNY, Richard A. GIBBS, Lucinda L. FULTON, Erica SODERGREN, George M. WEINSTOCK a David ŠMAJS. Whole Genome Sequences of Three Treponema pallidum ssp. pertenue Strains: Yaws and Syphilis Treponemes Differ in Less than 0.2% of the Genome Sequence. PLoS Neglected Tropical Diseases. San Francisco: Public Library of Science, 2012, roč. 6, č. 1, s. "nestrankovano", 14 s. ISSN 1935-2727. Dostupné z: https://dx.doi.org/10.1371/journal.pntd.0001471.

@article{976503,
   author = {Čejková, Darina and Zobaníková, Marie and Chen, Lei and Pospíšilová, Petra and Strouhal, Michal and Qin, Xiang and Mikalová, Lenka and Norris, Stephen J. and Muzny, Donna M. and Gibbs, Richard A. and Fulton, Lucinda L. and Sodergren, Erica and Weinstock, George M. and Šmajs, David},
   article_location = {San Francisco},
   article_number = {1},
   doi = {http://dx.doi.org/10.1371/journal.pntd.0001471},
   keywords = {Treponema pallidum; Syphilis; Genome; Yaws},
   language = {eng},
   issn = {1935-2727},
   journal = {PLoS Neglected Tropical Diseases},
   title = {Whole Genome Sequences of Three Treponema pallidum ssp. pertenue Strains: Yaws and Syphilis Treponemes Differ in Less than 0.2% of the Genome Sequence},
   url = {http://www.plosntds.org/article/info%3Adoi%2F10.1371%2Fjournal.pntd.0001471},
   volume = {6},
   year = {2012}
}

TY  - JOUR
ID  - 976503
AU  - Čejková, Darina - Zobaníková, Marie - Chen, Lei - Pospíšilová, Petra - Strouhal, Michal - Qin, Xiang - Mikalová, Lenka - Norris, Stephen J. - Muzny, Donna M. - Gibbs, Richard A. - Fulton, Lucinda L. - Sodergren, Erica - Weinstock, George M. - Šmajs, David
PY  - 2012
TI  - Whole Genome Sequences of Three Treponema pallidum ssp. pertenue Strains: Yaws and Syphilis Treponemes Differ in Less than 0.2% of the Genome Sequence
JF  - PLoS Neglected Tropical Diseases
VL  - 6
IS  - 1
SP  - "nestrankovano"
EP  - "nestrankovano"
PB  - Public Library of Science
SN  - 19352727
KW  - Treponema pallidum
KW  - Syphilis
KW  - Genome
KW  - Yaws
UR  - http://www.plosntds.org/article/info%3Adoi%2F10.1371%2Fjournal.pntd.0001471
L2  - http://www.plosntds.org/article/info%3Adoi%2F10.1371%2Fjournal.pntd.0001471
N2  - Spirochete Treponema pallidum ssp. pertenue (TPE) is the causative agent of yaws while strains of Treponema pallidum ssp. pallidum (TPA) cause syphilis. Both yaws and syphilis are distinguished on the basis of epidemiological characteristics and clinical symptoms. Neither treponeme can reproduce outside the host organism, which precludes the use of standard molecular biology techniques used to study cultivable pathogens. In this study, we determined high quality whole genome sequences of TPE strains and compared them to known genetic information for T. pallidum ssp. pallidum strains. The genome structure was identical in all three TPE strains and also between TPA and TPE strains. The TPE genome length ranged between 1,139,330 bp and 1,139,744 bp. The overall sequence identity between TPA and TPE genomes was 99.8%, indicating that the two pathogens are extremely closely related. A set of 34 TPE genes (3.5%) encoded proteins containing six or more amino acid replacements or other major sequence changes. These genes more often belonged to the group of genes with predicted virulence and unknown functions suggesting their involvement in infection differences between yaws and syphilis.
ER  -

ČEJKOVÁ, Darina, Marie ZOBANÍKOVÁ, Lei CHEN, Petra POSPÍŠILOVÁ, Michal STROUHAL, Xiang QIN, Lenka MIKALOVÁ, Stephen J. NORRIS, Donna M. MUZNY, Richard A. GIBBS, Lucinda L. FULTON, Erica SODERGREN, George M. WEINSTOCK a David ŠMAJS. Whole Genome Sequences of Three Treponema pallidum ssp. pertenue Strains: Yaws and Syphilis Treponemes Differ in Less than 0.2\%{} of the Genome Sequence. \textit{PLoS Neglected Tropical Diseases}. San Francisco: Public Library of Science, 2012, roč.~6, č.~1, s.~''nestrankovano'', 14 s. ISSN~1935-2727. Dostupné z: https://dx.doi.org/10.1371/journal.pntd.0001471.

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