Publication Records

VACULÍK, Ondřej, Silvie BERNATOVÁ, Mojmir SERY, Martin ŠILER, Ota SAMEK, Katarína REBROŠOVÁ, Filip RŮŽIČKA and Pavel ZEMÁNEK. Advanced Algorithms for Bacterial Analysis in Body Fluids Using Raman Tweezers. In 2023 Optica Biophotonics Congress: Optics in the Life Sciences, Vancouver, Canada. 2023. ISBN 978-1-957171-21-0. Available from: https://dx.doi.org/10.1364/OMA.2023.AW3D.2.

SAMEK, Ota, Katarína REBROŠOVÁ, Filip RŮŽIČKA, Zdeněk PILÁT, Martin KIZOVSKÝ, Silvie BERNATOVÁ, Marketa BENESOVA, Adéla MIKULOVÁ, Martin ŠILER and Pavel ZEMÁNEK. Effects of antimicrobials on microbial Raman spectra as the first step for detection of antimicrobialresistance. In 12th International Conference on Advanced Vibrational Spectroscopy (ICAVS12), Krakow, Poland. 2023.

RŮŽIČKA, Filip, Katarína REBROŠOVÁ, Veronika HOLÁ, Silvie BERNATOVÁ, Martin ŠILER, Ota SAMEK and Jan JEŽEK. Raman Spectroscopy For Identification Of Microbes From Chronic Wounds And Other Clinical Materials. In ASM Microbe, Houston, Texas, USA. 2023.

REBROŠOVÁ, Katarína, Silvie BERNATOVÁ, Martin ŠILER, Ota SAMEK, Veronika HOLÁ and Filip RŮŽIČKA. Identification of microbes from human body fluids by Raman spectroscopy. In FEMS Conference on Microbiology, Belgrade, Serbia. 2022.

REBROŠOVÁ, Katarína, Silvie BERNATOVÁ, Martin ŠILER, Ota SAMEK, Veronika HOLÁ and Filip RŮŽIČKA. Možnosť využitia Ramanovej spektroskopie pri identifikácii mikroorganizmov z telesných tekutín (Possible use of Raman spectroscopy in the identification of microorganisms from body fluids). In 29. KONGRES ČESKOSLOVENSKÉ SPOLEČNOSTI MIKROBIOLOGICKÉ. 2022. ISBN 978-80-88379-18-8.

REBROŠOVÁ, Katarína, Silvie BERNATOVÁ, Martin ŠILER, Jan JEŽEK, Jan MAŠEK, Veronika HOLÁ and Filip RŮŽIČKA. Use of Raman spectroscopy for identification of microorganisms from human body fluids. In 32nd ECCMID, The congress of ESCMID, Lisabon. 2022.

REBROŠOVÁ, Katarína, Silvie BERNATOVÁ, Martin ŠILER, Ota SAMEK and Filip RŮŽIČKA. Detection of pathogens in human body fluids by Raman spectroscopy. In XXX. konference mladých mikrobiologů Tomáškovy dny 2021. 2021. ISBN 978-80-210-9882-4.

SAMEK, Ota, Katarína REBROŠOVÁ and Silvie BERNATOVÁ. Monitoring of microbes causing urinary tract infections using Raman spectroscopy. In 11th INTERNATIONAL CONFERENCE ON ADVANCED VIBRATIONAL SPECTROSCOPY. 2021.

KIZOVSKÝ, Martin, Zdeněk PILÁT, Mykola MYLENKO, Pavel HROUZEK, Jan KUTA, Radim SKOUPY, Vladislav KRZYŽÁNEK, Kamila HRUBANOVA, Olga ADAMCZYK, Jan JEZEK, Silvie BERNATOVÁ, Tereza KLEMENTOVA, Alzbeta GJEVIK, Martin SILER, Ota SAMEK and Pavel ZEMANEK. Raman Microspectroscopic Analysis of Selenium Bioaccumulation by Green Alga Chlorella vulgaris. Biosensors. BASEL: MDPI, 2021, vol. 11, No 4, p. 1-13. ISSN 2079-6374. Available from: https://dx.doi.org/10.3390/bios11040115.

REBROŠOVÁ, Katarína, Silvie BERNATOVÁ, Martin ŠILER, Filip RŮŽIČKA, Ota SAMEK and Jan MAŠEK. Raman spectroscopy – a rapid tool for differentiation among microorganisms causing bloodstream infections. In World Microbe Forum. 2021.

SAMEK, Ota, Zdenek PILAT, Silvie BERNATOVÁ, Jan JEZEK, Tereza KLEMENTOVA, Martin KIZOVSKÝ, Pavel ZEMANEK, Katarína REBROŠOVÁ and Filip RŮŽIČKA. Analysis of microorganisms, chlorinated hydrocarbons and hyaluronic acid gel using Raman based optofluidic techniques and SERS. Online. In SPIE BiOS, 2019, San Francisco, California, United States. San Francisco, USA: SPIEBios, 2019, p. 44-51. ISBN 978-1-5106-2431-3. Available from: https://dx.doi.org/10.1117/12.2508425.

REBROŠOVÁ, Katarína, Martin ŠILER, Ota SAMEK, Filip RŮŽIČKA, Silvie BERNATOVÁ and Veronika HOLÁ. Využitie Ramanovej spektroskopie pri rozlišovaní schopnosti kmeňov tvoriť biofilm. In Tomáškovy dny 2019. XXVIII. konference mladých mikrobiologů. 2019. ISBN 978-80-210-9296-9.

TOMORI, Z, P KESA, M NIKOROVIC, J KANKA, Petr JÁKL, M SERY, Silvie BERNATOVÁ, E VALUSOVA, Marián ANTALÍK and Pavel ZEMÁNEK. Holographic Raman tweezers controlled by multi-modal natural user interface. Journal of Optics. Bristol: IOP Publishing, 2016, vol. 18, No 1, 9 pp. ISSN 2040-8978. Available from: https://dx.doi.org/10.1088/2040-8978/18/1/015602.

BERNATOVÁ, Silvie, O SAMEK, S OBRUCA, M SERY, P ZEMANEK and I MAROVA. Time evolution of trapped single cell microorganism. In Farkas, DL Nicolau, DV Leif, RC. IMAGING, MANIPULATION, AND ANALYSIS OF BIOMOLECULES, CELLS, AND TISSUES IX. BELLINGHAM: SPIE-INT SOC OPTICAL ENGINEERING, 2016, p. "SPIE"-"3", 4 pp. ISSN 0277-786X. Available from: https://dx.doi.org/10.1117/12.2213264.

BURDIKOVA, Z, Z SVINDRYCH, C HICKEY, MG WILKINSON, MAE AUTY, Ota SAMEK, Silvie BERNATOVÁ, Vladislav KRZYŽÁNEK, A PERIASAMY and JJ SHEEHAN. Application of advanced light microscopic techniques to gain deeper insights into cheese matrix physico-chemistry. DAIRY SCIENCE & TECHNOLOGY. PARIS: SPRINGER FRANCE, 2015, vol. 95, No 5, p. 687-700. ISSN 1958-5586. Available from: https://dx.doi.org/10.1007/s13594-015-0253-2.

MLYNÁRIKOVÁ, Katarína, Ota SAMEK, Silvie BERNATOVÁ, Jan JEŽEK, Martin ŠILER, Pavel ZEMÁNEK, Filip RŮŽIČKA, Veronika HOLÁ and Martina MAHELOVÁ. Biofilm detection by Raman spectrometry. In Fourth European Congress on Microbial Biofilms. 2015.

SAMEK, Ota, Silvie BERNATOVÁ, Jan JEŽEK, Martin ŠILER, Mojmir ŠERÝ, Vladislav KRZYŽÁNEK, Kamila HRUBANOVÁ, Pavel ZEMÁNEK, Veronika HOLÁ and Filip RŮŽIČKA. Identification of individual biofilm-forming bacterial cells using Raman tweezers. Journal of Biomedical Optics. Bellingham: SPIE, 2015, vol. 20, No 5, p. "051038-1"-"051038-6", 6 pp. ISSN 1083-3668. Available from: https://dx.doi.org/10.1117/1.JBO.20.5.051038.

MLYNÁRIKOVÁ, Katarína, Ota SAMEK, Silvie BERNATOVÁ, Filip RŮŽIČKA, J JEZEK, A HARONIKOVA, Martin ŠILER, Pavel ZEMÁNEK and V HOLA. Influence of Culture Media on Microbial Fingerprints Using Raman Spectroscopy. Sensors. Basel: MDPI AG, 2015, vol. 15, No 11, p. 29635-29647. ISSN 1424-8220. Available from: https://dx.doi.org/10.3390/s151129635.

MLYNÁRIKOVÁ, Katarína, Ota SAMEK, Filip RŮŽIČKA and Silvie BERNATOVÁ. Využitie Ramanovej spektroskopie pri diagnostike stafylokokov (Use of Raman spectroscopy as a diagnostic tool for staphylococci). In In XXIV. Tomáškovy dny mladých mikrobiologů. 2015. ISBN 978-80-210-7851-2.

SAMEK, Ota, Katarína MLYNÁRIKOVÁ, Silvie BERNATOVÁ, Jan JEŽEK, Vladislav KRZYŽÁNEK, Martin ŠILER, Pavel ZEMÁNEK, Filip RŮŽIČKA, Veronika HOLÁ and Martina MAHELOVÁ. Candida parapsilosis Biofilm Identification by Raman Spectroscopy. International Journal of Molecular Sciences. Basel: Multidisciplinary Digital Publishing Institute, 2014, vol. 15, No 12, p. 23924-23935. ISSN 1422-0067. Available from: https://dx.doi.org/10.3390/ijms151223924.

SAMEK, Ota, Pavel ZEMÁNEK, Silvie BERNATOVÁ, Jan JEZEK, Mojmir SERY, Petr JAKL, Martin ŠILER and Filip RŮŽIČKA. Monitoring the influence of antibiotic exposure using Raman spectroscopy. In Anita Mahadevan-Jansen; Wolfgang Petrich. Proceedings of SPIE : BIOMEDICAL VIBRATIONAL SPECTROSCOPY VI: ADVANCES IN RESEARCH AND INDUSTRY. San Francisco, California, United States: SPIE, 2014, p. 1-6. ISBN 978-0-8194-9852-6. Available from: https://dx.doi.org/10.1117/12.2038595.

BERNATOVÁ, Silvie, Ota SAMEK, Zdenek PILAT, Mojmir SERY, Jan JEZEK, Petr JAKL, Martin ŠILER, Vladislav KRZYŽÁNEK, Pavel ZEMÁNEK, Veronika HOLÁ, Milada DVOŘÁČKOVÁ and Filip RŮŽIČKA. Raman tweezers on bacteria: Following the mechanisms of bacteriostatic versus bactericidal action. In Jürgen Popp; Valery V. Tuchin; Dennis L. Matthews; Francesco S. Pavone; Paul Garside. Proceedings of SPIE : BIOPHOTONICS: PHOTONIC SOLUTIONS FOR BETTER HEALTH CARE IV. Brussels, Belgium: SPIE, 2014, p. 1-7. ISBN 978-1-62841-077-8. Available from: https://dx.doi.org/10.1117/12.2052538.

SAMEK, Ota, Katarína MLYNÁRIKOVÁ, Silvie BERNATOVÁ, Jan JEŽEK, Vladislav KRYŽÁNEK, Martin ŠILER, Pavel ZEMÁNEK and Filip RŮŽIČKA. Reproducible and time-course study of yeast biofilm by Raman spectroscopy. In Proc. SPIE. 9441, 19th Polish-Slovak-Czech Optical Conference on Wave and Quantum Aspects of Contemporary Optics, 94411M. 2014. Available from: https://dx.doi.org/10.1117/12.2176031.

SAMEK, Ota, Silvie BERNATOVÁ, Jan JEŽEK, Zdeněk PILÁT, Vladislav KRZYŽÁNEK, Martin ŠILER, Pavel ZEMÁNEK, Katarína MLYNÁRIKOVÁ and Filip RŮŽIČKA. Time-course study of bacterial and yeast biofilms exposed to antimicrobial agents by Raman spectroscopy. In Proc. ICORS XXIV, 24th International Conference on Raman Spectroscopy. 2014.

BERNATOVÁ, Silvie, Ota SAMEK, Zdeněk PILÁT, Mojmír ŠERÝ, Jan JEŽEK, Petr JÁKL, Martin ŠILER, Vladislav KRZYŽÁNEK, Pavel ZEMÁNEK, Veronika HOLÁ, Milada DVOŘÁČKOVÁ and Filip RŮŽIČKA. Following the mechanisms of bacteriostatic versus bactericidal action using raman spectroscopy. Molecules. Basel: Molecular Diversity Preservation International, 2013, vol. 18, No 11, p. 13188-13199. ISSN 1420-3049. Available from: https://dx.doi.org/10.3390/molecules181113188.

POŘÍZKA, Pavel, David PROCHAZKA, Zdeněk PILÁT, Lucie KRAJCAROVÁ, Jozef KAISER, Radomír MALINA, Jan NOVOTNÝ, Pavel ZEMÁNEK, Jan JEŽEK, Mojmír ŠERÝ, Silvie BERNATOVÁ, vladislav KRZYŽÁNEK, Petr ZAPLETAL, Karel NOVOTNÝ, Martin TRTÍLEK and Ota SAMEK. Application of laser-induced breakdown spectroscopy to the analysis of algal biomass for industrial biotechnology. Spectrochimica Acta B. PERGAMON-ELSEVIER SCIENCE LTD, 2012. ISSN 0584-8547.

PILÁT, Zdeněk, Silvie BERNATOVÁ, Ota SAMEK and Pavel ZEMÁNEK. Raman microspectroscopy of algal lipid bodies: beta-carotene quantification. Journal of Applied Phycology. Dordrecht, Netherlands: SPRINGER, 2012. ISSN 0921-8971.

MEDUŇA, Mojmír, Ondřej CAHA, Jiří RŮŽIČKA, Silvie BERNATOVÁ, Milan SVOBODA and Jiří BURŠÍK. Oxygen precipitation studied by x-ray diffraction techniques. Solid State Phenomena. Trans Tech Publications, 2011, Neuveden, 178-179, p. 325-330. ISSN 1012-0394.

CAHA, Ondřej, Silvie BERNATOVÁ, Mojmír MEDUŇA, Milan SVOBODA and Jiří BURŠÍK. Study of oxide precipitates in silicon using X-ray diffraction techniques. physica status solidi (a), Applied research. Wiley-Blackwell, 2011, vol. 208, No 11, p. 2587-2590. ISSN 1862-6300. Available from: https://dx.doi.org/10.1002/pssa.201184263.

CAHA, Ondřej, Mojmír MEDUŇA, Silvie BERNATOVÁ, Jiří RŮŽIČKA, Petr MIKULÍK, Jiří BURŠÍK, Milan SVOBODA and S. BERNSTORFF. X-ray scattering study of oxide precipitates in Cz-Si. 2010. ISBN 978-80-254-7361-0.