Publication Records

TANASA, Sorin, Neha SHUKLA, Albert CAIRO CALZADA, Sri Ranjani GANJI, Pavlína MIKULKOVÁ, Soňa VALUCHOVÁ, Vivek Kumar RAXWAL, Claudio CAPITAO, Arp SCHNITTGER, Zbyněk ZDRÁHAL and Karel ŘÍHA. A complex role of Arabidopsis CDKD;3 in meiotic progression and cytokinesis. Plant Direct. Wiley, 2023, vol. 7, No 3, p. 1-16. ISSN 2475-4455. Available from: https://dx.doi.org/10.1002/pld3.477.

AHMADLI, Ulkar, Manikandan KALIDASS, Lucie CRHÁK KHAITOVÁ, Joerg FUCHS, Maria CUACOS, Dmitri DEMIDOV, Sheng ZUO, Jana PEČINKOVÁ, Martin MASCHER, Mathieu INGOUFF, Stefan HECKMANN, Andreas HOUBEN, Karel ŘÍHA and Inna LERMONTOVA. High temperature increases centromere-mediated genome elimination frequency and enhances haploid induction in Arabidopsis. Plant Communications. Elsevier, 2023, vol. 4, No 3, p. 1-13. ISSN 2590-3462. Available from: https://dx.doi.org/10.1016/j.xplc.2022.100507.

RAXWAL, Vivek Kumar and Karel ŘÍHA. The biological functions of nonsense-mediated mRNA decay in plants: RNA quality control and beyond. Biochemical Society Transactions. London: Portland Press, 2023, vol. 51, No 1, p. 31-39. ISSN 0300-5127. Available from: https://dx.doi.org/10.1042/BST20211231.

FULNEČEK, Jaroslav, Eva KLIMENTOVÁ, Albert CAIRO CALZADA, Soňa BUKOVČÁKOVÁ, Panagiotis ALEXIOU, Zbyněk PROKOP and Karel ŘÍHA. The SAP domain of Ku facilitates its efficient loading onto DNA ends. Nucleic Acids Research. Oxford: Oxford University Press, 2023, vol. 51, No 21, p. 11706-11716. ISSN 0305-1048. Available from: https://dx.doi.org/10.1093/nar/gkad850.

VALUCHOVÁ, Soňa, Pavlína MIKULKOVÁ, Jana PEČINKOVÁ and Karel ŘÍHA. Application of Chemical Inhibitors in Live Cell Imaging of Plant Meiosis Using Light Sheet Fluorescence Microscopy. In Plant Gametogenesis. Methods in Molecular Biology, vol 2484. Humana New York, NY: Humana Press Inc., 2022, p. 93-105. Plant Gametogenesis. Methods in Molecular Biology, vol 2484. ISBN 978-1-0716-2252-0. Available from: https://dx.doi.org/10.1007/978-1-0716-2253-7_8.

MOTTA, M.R., X. ZHAO, M. PASTUGLIA, K. BELCRAM, F. ROODBARKELARI, M. KOMAKI, H. HARASHIMA, S. KOMAKI, M. KUMAR, P. BULANKOVA, M. HEESE, Karel ŘÍHA, D. BOUCHEZ and A. SCHNITTGER. B1-type cyclins control microtubule organization during cell division in Arabidopsis. EMBO reports. Hoboken: Wiley-Blackwell, 2022, vol. 23, No 1, p. „e53995“, 18 pp. ISSN 1469-221X. Available from: https://dx.doi.org/10.15252/embr.202153995.

JAROUR, Ester, Karel ŘÍHA and Pavel PLEVKA. Fokus Václava Moravce – Věda jako spása (The focus of Václav Moravec - Science as salvation). 2022.

CAIRO CALZADA, Albert, Anna VARGOVÁ, Neha SHUKLA, Claudio CAPITAO, Pavlína MIKULKOVÁ, Soňa VALUCHOVÁ, Jana PEČINKOVÁ, Petra BULANKOVA and Karel ŘÍHA. Meiotic exit in Arabidopsis is driven by P-body-mediated inhibition of translation. Science. WASHINGTON: AMER ASSOC ADVANCEMENT SCIENCE, 2022, vol. 377, No 6606, p. 629-634. ISSN 0036-8075. Available from: https://dx.doi.org/10.1126/science.abo0904.

RAXWAL, Vivek Kumar, Somya SINGH, Manu AGARWAL and Karel ŘÍHA. Transcriptional and post-transcriptional regulation of young genes in plants. BMC Biology. London: BMC, 2022, vol. 20, No 1, p. 134-140. ISSN 1741-7007. Available from: https://dx.doi.org/10.1186/s12915-022-01339-7.

CAPITAO, C., Sorin TANASA, Jaroslav FULNEČEK, Vivek Kumar RAXWAL, S. AKIMCHEVA, P. BULANKOVA, Pavlína MIKULKOVÁ, Lucie CRHÁK KHAITOVÁ, M. KALIDASS, I. LERMONTOVA, M. SCHEIDID and Karel ŘÍHA. A CENH3 mutation promotes meiotic exit and restores fertility in SMG7-deficient Arabidopsis. PLoS Genetics. San Francisco: Public Library of Science, 2021, vol. 17, No 9, p. „e1009779“, 26 pp. ISSN 1553-7404. Available from: https://dx.doi.org/10.1371/journal.pgen.1009779.

WATSON, J.M., J. TRIEB, M. TROESTL, K. RENFREW, Terezie MALÍK MANDÁKOVÁ, Jaroslav FULNEČEK, D.E. SHIPPEN and Karel ŘÍHA. A hypomorphic allele of telomerase uncovers the minimal functional length of telomeres in Arabidopsis. Genetics. BETHESDA (USA): GENETICS SOCIETY AMERICA, 2021, vol. 219, No 2, p. „iyab126“, 9 pp. ISSN 0016-6731. Available from: https://dx.doi.org/10.1093/genetics/iyab126.

FULNEČEK, Jaroslav and Karel ŘÍHA. High-Throughput Protein-Nucleic Acid Interaction Assay Based on Protein-Induced Fluorescence Enhancement. Online. In RNA REMODELING PROTEINS. TOTOWA: HUMANA PRESS INC, 2021, p. 109-117. 2 EDITION. ISBN 978-1-0716-0934-7. Available from: https://dx.doi.org/10.1007/978-1-0716-0935-4_7.

VALUCHOVÁ, Soňa, Pavlína MIKULKOVÁ, Jana PEČINKOVÁ, J. KLIMOVA, M. KRUMNIKL, P. BAINAR, S. HECKMANN, P. TOMANCAK and Karel ŘÍHA. Imaging plant germline differentiation within Arabidopsis flowers by light sheet microscopy. elife. CAMBRIDGE: ELIFE SCIENCES PUBLICATIONS LTD, 2020, vol. 9, FEB, p. 52546-52564. ISSN 2050-084X. Available from: https://dx.doi.org/10.7554/eLife.52546.

RAXWAL, Vivek Kumar, C.G. SIMPSON, J. GLOGGNITZER, J.C. ENTINZE, W.B. GUO, R.X. ZHANG, J.W.S. BROWN and Karel ŘÍHA. Nonsense-Mediated RNA Decay Factor UPF1 Is Critical for Posttranscriptional and Translational Gene Regulation in Arabidopsis. Plant Cell. ROCKVILLE: AMER SOC PLANT BIOLOGISTS, 2020, vol. 32, No 9, p. 2725-2741. ISSN 1040-4651. Available from: https://dx.doi.org/10.1105/tpc.20.00244.

JAVORKA, P., Vivek Kumar RAXWAL, J. NAJVAREK and Karel ŘÍHA. artMAP: A user-friendly tool for mapping ethyl methanesulfonate-induced mutations in Arabidopsis. PLANT DIRECT. CHICHESTER: JOHN WILEY & SONS LTD, 2019, vol. 3, No 6, p. 1-7. ISSN 2475-4455. Available from: https://dx.doi.org/10.1002/pld3.146.

EBERHARD, S., Soňa VALUCHOVÁ, J. RAVAT, Jaroslav FULNEČEK, P. JOLIVET, S. BUJALDON, S.D. LEMAIRE, F.A. WOLLMAN, M.T. TEIXEIRA, Karel ŘÍHA and Z. XU. Molecular characterization of Chlamydomonas reinhardtii telomeres and telomerase mutants. LIFE SCIENCE ALLIANCE. COLD SPRING HARBOR: LIFE SCIENCE ALLIANCE LLC, 2019, vol. 2, No 3, p. 1-15. ISSN 2575-1077. Available from: https://dx.doi.org/10.26508/lsa.201900315.

CAPITAO, C., Neha SHUKLA, Aneta WANDROLOVÁ, O.M. SCHEID and Karel ŘÍHA. Functional Characterization of SMG7 Paralogs in Arabidopsis thaliana. Frontiers in Plant Science. Lausanne (Switzerland): Frontiers Media SA, 2018, vol. 9, NOV, p. 1602-1611. ISSN 1664-462X. Available from: https://dx.doi.org/10.3389/fpls.2018.01602.

VALUCHOVÁ, Soňa, Jaroslav FULNEČEK, Zbyněk PROKOP, Peggy STOLT-BERGNER, Eliška JANOUŠKOVÁ, Ctirad HOFR and Karel ŘÍHA. Protection of Arabidopsis Blunt-Ended Telomeres Is Mediated by a Physical Association with the Ku Heterodimer. Plant Cell. ROCKVILLE: AMER SOC PLANT BIOLOGISTS, 2017, vol. 29, No 6, p. 1533-1545. ISSN 1040-4651. Available from: https://dx.doi.org/10.1105/tpc.17.00064.

VALUCHOVÁ, Soňa, Jaroslav FULNEČEK, Alexander PETROV, Konstantinos TRIPSIANES and Karel ŘÍHA. A rapid method for detecting protein-nucleic acid interactions by protein induced fluorescence enhancement. Scientific Reports. LONDON: NATURE PUBLISHING GROUP, 2016, vol. 6, December, p. nestránkováno, 10 pp. ISSN 2045-2322. Available from: https://dx.doi.org/10.1038/srep39653.

VALUCHOVÁ, Soňa, Elisa DERBOVEN and Karel ŘÍHA. Analysis of Telomeric G -overhangs by in- Gel Hybridization. Bio-protocol. Sunnyvale: Bio-protocol LLC, 2016, vol. 6, No 7, p. nestránkováno, 9 pp. ISSN 2331-8325. Available from: https://dx.doi.org/10.21769/BioProtoc.1775.

KAZDA, Anita, Svetlana AKIMCHEVA, Matthew J. WATSON and Karel ŘÍHA. Cell Proliferation Analysis Using EdU Labeling in Whole Plant and Histological Samples of Arabidopsis. In Marie-Cécile Caillaud. Plant Cell Division - Methods and Protocols. New York: Springer, 2016, p. 169-182. Methods in Molecular Biology, 1370. ISBN 978-1-4939-3141-5. Available from: https://dx.doi.org/10.1007/978-1-4939-3142-2_13.

WATSON, J. Matthew, Alexander PLATZER, Anita KAZDA, Svetlana AKIMCHEVA, Soňa VALUCHOVÁ, Viktoria NIZHYNSKA, Magnus NORDBORG and Karel ŘÍHA. Germline replications and somatic mutation accumulation are independent of vegetative life span in Arabidopsis. Proceedings of the National Academy of Sciences of the United States of America. WASHINGTON: National Academy of Sciences, 2016, vol. 113, No 43, p. 12226-12231. ISSN 0027-8424. Available from: https://dx.doi.org/10.1073/pnas.1609686113.

RAXWAL, Vivek Kumar and Karel ŘÍHA. Nonsense mediated RNA decay and evolutionary capacitance. BIOCHIMICA ET BIOPHYSICA ACTA-GENE REGULATORY MECHANISMS. AMSTERDAM: ELSEVIER SCIENCE BV, 2016, vol. 1859, No 12, p. 1538-1543. ISSN 1874-9399. Available from: https://dx.doi.org/10.1016/j.bbagrm.2016.09.001.

CIFUENTES, Marta, Sylvie JOLIVET, Laurence CROMER, Hirofumi HARASHIMA, Petra BULANKOVA, Charlotte RENNE, Wayne CRISMANI, Yuko NOMURA, Hirofumi NAKAGAMI, Keiko SUGIMOTO, Arp SCHNITTGER, Karel ŘÍHA and Raphael MERCIER. TDM1 Regulation Determines the Number of Meiotic Divisions. PLOS GENETICS. SAN FRANCISCO: PUBLIC LIBRARY SCIENCE, 2016, vol. 12, No 2, p. nestránkováno, 22 pp. ISSN 1553-7404. Available from: https://dx.doi.org/10.1371/journal.pgen.1005856.

FULCHER, Nick and Karel ŘÍHA. Using Centromere Mediated Genome Elimination to Elucidate the Functional Redundancy of Candidate Telomere Binding Proteins in Arabidopsis thaliana. FRONTIERS IN GENETICS. LAUSANNE: FRONTIERS MEDIA SA, 2016, vol. 6, January, p. nestránkováno, 9 pp. ISSN 1664-8021. Available from: https://dx.doi.org/10.3389/fgene.2015.00349.

FULCHER, Nick, Astrid TEUBENBACHER, Envel KERDAFFREC, Ashley FARLOW, Magnus NORDBORG and Karel ŘÍHA. Genetic Architecture of Natural Variation of Telomere Length in Arabidopsis thaliana. Genetics. BETHESDA (USA): GENETICS SOCIETY AMERICA, 2015, vol. 199, No 2, p. 625-635. ISSN 0016-6731. Available from: https://dx.doi.org/10.1534/genetics.114.172163.

PLECENIKOVA, A., M. SLANINOVA and Karel ŘÍHA. Characterization of DNA Repair Deficient Strains of Chlamydomonas reinhardtii Generated by Insertional Mutagenesis. Plos one. SAN FRANCISCO: PUBLIC LIBRARY SCIENCE, 2014, vol. 9, No 8, p. "nestránkováno", 9 pp. ISSN 1932-6203. Available from: https://dx.doi.org/10.1371/journal.pone.0105482.

FULCHER, N., E. DERBOVEN, S. VALUCHOVA and Karel ŘÍHA. If the cap fits, wear it: an overview of telomeric structures over evolution. Cellular and molecular life sciences. BASEL: BIRKHAUSER VERLAG AG, 2014, vol. 71, No 5, p. 847-865. ISSN 1420-682X. Available from: https://dx.doi.org/10.1007/s00018-013-1469-z.

GLOGGNITZER, J., S. AKIMCHEVA, A. SRINIVASAN, B. KUSENDA, N. RIEHS, H. STAMPFL, J. BAUTOR, B. DEKROUT, C. JONAK, J.M. JIMENEZ-GOMEZ, J.E. PARKER and Karel ŘÍHA. Nonsense-Mediated mRNA Decay Modulates Immune Receptor Levels to Regulate Plant Antibacterial Defense. CELL HOST & MICROBE. CAMBRIDGE: CELL PRESS, 2014, vol. 16, No 3, p. 376-390. ISSN 1931-3128. Available from: https://dx.doi.org/10.1016/j.chom.2014.08.010.

DERBOVEN, E., H. EKKER, B. KUSENDA, Petra BULÁNKOVÁ and Karel ŘÍHA. Role of STN1 and DNA Polymerase alpha in Telomere Stability and Genome-Wide Replication in Arabidopsis. PLoS Genetics. San Francisco, California, United States: Public Library Science, 2014, vol. 10, No 10, p. "nestránkováno", 13 pp. ISSN 1553-7390. Available from: https://dx.doi.org/10.1371/journal.pgen.1004682.

SAMANIC, Ivica, Juraj SIMUNIC, Karel ŘÍHA and Jasna PUIZINA. Evidence for Distinct Functions of MRE11 in Arabidopsis Meiosis. PLOS ONE. Public Library of Science, 2013, vol. 8, No 10, p. "nestránkováno", 12 pp. ISSN 1932-6203. Available from: https://dx.doi.org/10.1371/journal.pone.0078760.

VRBSKÝ, Jan, Karel ŘÍHA, Svetlana AKIMCHEVA and James Matthew WATSON. siRNA-mediated methylation of Arabidopsis telomeres. PLoS Genetics. Public Library of Science, 2010, 6.2010, 6/6, 12 pp. ISSN 1553-7390.

ŘÍHA, Karel, Thomas MCKNIGHT, Jiří FAJKUS, Boris VYSKOT and Dorothy E. SHIPPEN. Analysis of the G-overhang structures on plant telomeres: evidence for two distinct telomere architectures. The Plant Journal. Velká Británie: Blackwell Science Ltd, 2000, vol. 23, No 5, p. 633-641. ISSN 0960-7412.

ŘÍHA, Karel, Boris VYSKOT, Jiří FAJKUS and Dorothy SHIPPEN. Telomerase activity, telomere length and telomere structure in the dicot plant silene latifolia. In Abstracts of telomeres and telomerase meeting. 1st ed. Cold Spring Harbor: CSH Laboratory, 1999, p. 132.

ŘÍHA, Karel, Jiří FAJKUS, Jiří ŠIROKÝ and Boris VYSKOT. Developmental Control of Telomere Lengths and Telomerase Activity in Plants. The Plant Cell. American Society of Plant Physiologists, 1998, vol. 10, No 10, p. 1691-1698. ISSN 1040-4651.

ŘÍHA, Karel, Jiří FAJKUS, Jiří ŠIROKÝ and Boris VYSKOT. Developmenthal control of telomere lengths and telomerase activity in plants. In 1st European workshop. 1st ed. Germany: 1st European workshop, 1998, p. -, 1 pp.

HORÁKOVÁ, Mirka, Jana FULNEČKOVÁ, Helena ROBEŠOVÁ, Karel ŘÍHA and Jiří FAJKUS. Dynamics of plant telomeres. In 15th International Workshop on the Cell Nucleus. 15th ed. Quebec, Canada: The Wilhelm Bernhard Workshop, 1998, p. 95-96.

FAJKUS, Jiří, Jana FULNEČKOVÁ, Mirka HORÁKOVÁ, Klára POLÁČKOVÁ, Karel ŘÍHA and Roman MATYÁŠEK. Plant cells express telomerase activity upon transfer to callus culture, without extensively changing telomere lengths. Molecular and General Genetics. 1998, vol. 260, No 5, p. 470-474. ISSN 0026-8925.

FAJKUS, Jiří, Karel ŘÍHA, Jana FULNEČKOVÁ, Mirka HORÁKOVÁ and Klára POLÁČKOVÁ. Telomere dynamics during plant development. In Dynamic organization of nuclear function. -. New York: Cold Spring Harbor Laboratory, 1998, p. 89.

FAJKUS, Jiří, Jana FULNEČKOVÁ, Mirka HORÁKOVÁ, Klára POLÁČKOVÁ, Karel ŘÍHA and Roman MATYÁŠEK. Telomere dynamics during plant differentiation and dedifferentiation. In 1st European workshop. 1st ed. Germany: 1st European workshop, 1998, p. 42.