Publication Records

CHOCHOLOVÁ, Eva, Eva DROZDOVÁ, Dana FIALOVÁ, Pavel ROUDNICKÝ, Zbyněk ZDRÁHAL, Barbora ZWINSOVÁ, Kateřina NOVOTNÁ, Filip PARDY, Jakub HYNŠT, Marek PEŠKA, Antonín ZŮBEK, Kateřina MRÁZOVÁ, Vladislav KRZYŽÁNEK, Michael DOUBEK and Šárka POSPÍŠILOVÁ. Metagenomic and proteomic analysis of dental calculus of abbot Gregor Johann Mendel. Online. Folia Mendeliana : supplementum ad Acta Musei Moraviae. Moravian Museum Brno, vol. 58, No 1, p. 57-61. ISSN 0085-0748

CHOCHOLOVÁ, Eva, Eva DROZDOVÁ, Dana FIALOVÁ, Pavel ROUDNICKÝ, Zbyněk ZDRÁHAL, Barbora ZWINSOVÁ, Kateřina NOVOTNÁ, Filip PARDY, Jakub HYNŠT, Marek PEŠKA, Antonín ZŮBEK, Kateřina MRÁZOVÁ, Vladislav KRZYŽÁNEK, Michael DOUBEK and Šárka POSPÍŠILOVÁ. Metagenomic and proteomic analysis of dental calculus of abbot Gregor Johann Mendel. Online. In Mendel Genetics Conference 2022. ISBN 978-80-11-01750-7

CHOCHOLOVÁ, Eva, Eva DROZDOVÁ, Dana FIALOVÁ, Martin ČERNÝ, Barbora ZWINSOVÁ, Petra VÍDEŇSKÁ, Kristýna BRZOBOHATÁ and Kateřina NOVOTNÁ. Metagenomic research of the ancient human dental calculus as a potential source for the study of rare infectious diseases. Online. In The Biomania Student Scientific Meeting 2022. ISBN 978-80-280-0040-0

CHOCHOLOVÁ, Eva, Eva DROZDOVÁ, Dana FIALOVÁ, Kateřina NOVOTNÁ, Pavel ROUDNICKÝ, Zbyněk ZDRÁHAL, Kateřina MRÁZOVÁ, Vladislav KRZYŽÁNEK, Barbora ZWINSOVÁ, Filip PARDY, Marek PEŠKA, Antonín ZŮBEK, Michael DOUBEK and Šárka POSPÍŠILOVÁ. Molekulárně biologická analýza zubního kamene a mumifikované tkáně Gregora Johanna Mendela (Biomolecular analysis of calculus and mummified tissue of Gregor Johann Mendel). Online. In Genetická konference Genetické společnosti Gregora Mendela a XXIX. Genetické dny. ISBN 978-80-7302-182-5

KOTÁSKOVÁ, Iva, Vít SYROVÁTKA, Hana OBRUČOVÁ, Petra VÍDEŇSKÁ, Barbora ZWINSOVÁ, Veronika HOLÁ, Eva BLAŠTÍKOVÁ, Filip RŮŽIČKA and Tomáš FREIBERGER. Actinotignum schaalii: Relation to Concomitants and Connection to Patients’ Conditions in Polymicrobial Biofilms of Urinary Tract Catheters and Urines. Online. Microorganisms. Basel: MDPI, vol. 9, No 3, p. 1-23. ISSN 2076-2607. Available from: https://dx.doi.org/10.3390/microorganisms9030669

ZWINSOVÁ, Barbora, Viacheslav PETROV, Martina HRIVŇÁKOVÁ, Stanislav SMATANA, Lenka KOSEČKOVÁ MICENKOVÁ, Natálie KAZDOVÁ, Vlad POPOVICI, Roman HRSTKA, Roman ŠEFR, Beatrix BENCSIKOVÁ, Lenka ZDRAŽILOVÁ DUBSKÁ, Veronika BRYCHTOVÁ, Rudolf NENUTIL, Petra VÍDEŇSKÁ and Eva BUDINSKÁ. Colorectal Tumour Mucosa Microbiome Is Enriched in Oral Pathogens and Defines Three Subtypes That Correlate with Markers of Tumour Progression. Online. Cancers. MDPI, vol. 13, No 19, p. 1-25. ISSN 2072-6694. Available from: https://dx.doi.org/10.3390/cancers13194799

SELINGEROVA, I., Eva BUDINSKÁ, Barbora ZWINSOVÁ, B. MAZALOVA, B. BENCSIKOVA, D. VALIK and L.Z. DUBSKA. Anti-alpha gal antibodies in the context of blood group and stool and tumour-adjacent microbiome in colorectal cancer patients. Online. In Immuno-Oncology Congress of the European-Society-for-Medical-Oncology (ESMO). ISSN 0923-7534

CHOCHOLOVÁ, Eva, Dana FIALOVÁ, Eva DROZDOVÁ, Radim SKOUPÝ, Kristýna BRZOBOHATÁ, Barbora ZWINSOVÁ, Petra VÍDEŇSKÁ and Václav CHOCHOLA. Looking at the health of past populations through the lens of human dental calculus. Online. In The Biomania Student Scientific Meeting & EUSynBioS Symposium 2019. ISBN 978-80-210-9373-7

CHOCHOLOVÁ, Eva, Dana FIALOVÁ, Eva DROZDOVÁ, Radim SKOUPÝ, Kristýna BRZOBOHATÁ, Barbora ZWINSOVÁ, Petra VÍDEŇSKÁ and Václav CHOCHOLA. Microbial Contamination of Ancient Human Dental Calculus Studied by Scanning Electron Microscopy and Metagenomic Approach. Online. In 6th International Anthropological Congress of Dr. Aleš Hrdlička. ISSN 2336-4777

KOTÁSKOVÁ, Iva, Hana OBRUČOVÁ, Barbora MALIŠOVÁ, Petra VÍDEŇSKÁ, Barbora ZWINSOVÁ, Tereza PEROUTKOVÁ, Milada DVOŘÁČKOVÁ, Petr KUMSTÁT, Pavel TROJAN, Filip RŮŽIČKA, Veronika HOLÁ and Tomáš FREIBERGER. Molecular Techniques Complement Culture-Based Assessment of Bacteria Composition in Mixed Biofilms of Urinary Tract Catheter-Related Samples. Online. Frontiers in Microbiology. Lausanne: Frontiers Media SA, vol. 10, No 462, p. 1-15. ISSN 1664-302X. Available from: https://dx.doi.org/10.3389/fmicb.2019.00462

VÍDEŇSKÁ, Petra, Kristýna ŠMERKOVÁ, Barbora ZWINSOVÁ, Vlad POPOVICI, Lenka MICENKOVÁ, Karel SEDLAR and Eva BUDINSKÁ. Stool sampling and DNA isolation kits affect DNA quality and bacterial composition following 16S rRNA gene sequencing using MiSeq Illumina platform. Online. Scientific reports. LONDON: NATURE PUBLISHING GROUP, vol. 9, SEP 2019, p. 1-14. ISSN 2045-2322. Available from: https://dx.doi.org/10.1038/s41598-019-49520-3

FIALOVÁ, Dana, Eva CHOCHOLOVÁ, Eva DROZDOVÁ, Kristýna BRZOBOHATÁ, Barbora ZWINSOVÁ, Petra VÍDEŇSKÁ, Václav CHOCHOLA and Bohuslav KLÍMA. Study of domestication via human dental calculus in the Early Middle Ages. Online. In 6th International Anthropological Congress of Dr. Aleš Hrdlička. ISSN 2336-4777

ZWINSOVÁ, Barbora, Veronika BRYCHTOVÁ, Martina HRIVŇÁKOVÁ, Lenka ZDRAŽILOVÁ DUBSKÁ, Beatric BENCSIKOVÁ, Roman ŠEFR, Rudolf NENUTIL, Petra VÍDEŇSKÁ and Eva BUDINSKÁ. Vliv mikrobiomu na vznik a vývoj kolorektálního karcinomu (Role of the Microbiome in the Formation and Development of Colorectal Cancer). Online. Klinická onkologie. Ambit Media, a.s., vol. 32, No 4, p. 261-269. ISSN 0862-495X. Available from: https://dx.doi.org/10.14735/amko2019261

ZWINSOVÁ, Barbora, Jan OPPELT, Petra VÍDEŇSKÁ and Eva BUDINSKÁ. Identifikace mikrobiomu kolorektálního karcinomu z RNAseq dat nádorové tkáně a jeho korelace s klinickými proměnnými a molekulárními podtypy. Online. In Brněnské onkologické dny. ISSN 0862-495X

BYSTRÝ, Vojtěch, Tomáš REIGL, Adam KREJČÍ, Martin DEMKO, Barbora HANÁKOVÁ, Andrea GRIONI, Henrik KNECHT, Max SCHLITT, Peter DREGER, Leopold SELLNER, Dietrich HERRMANN, Marine PINGEON, Myriam BOUDJOGHRA, Jos RIJNTJES, Christiane POTT, Anton W. LANGERAK, Patricia J. T. A. GROENEN, Frederic DAVI, Monika BRUGGEMANN and Nikos DARZENTAS. ARResT/Interrogate: an interactive immunoprofiler for IG/TR NGS data. Online. Bioinformatics. Oxford: Oxford University Press, vol. 33, No 3, p. 435-437. ISSN 1367-4803. Available from: https://dx.doi.org/10.1093/bioinformatics/btw634

KOTÁSKOVÁ, Iva, Petra VÍDEŇSKÁ, Hana OBRUČOVÁ, Barbora ZWINSOVÁ, Barbora MALIŠOVÁ, Veronika HOLÁ and Tomáš FREIBERGER. Comparison of Culture and Sequencing-Based Assessment of Bacterial Consortia Composition in Biofilms of Catheters. Online. In ASM Microbe 2017, New Orleans

KOTÁSKOVÁ, Iva, Petra VÍDEŇSKÁ, Hana OBRUČOVÁ, Barbora ZWINSOVÁ, Barbora MALIŠOVÁ, Veronika HOLÁ and Tomáš FREIBERGER. Comparison of Culture and Sequencing-Based Assessment of Bacterial Consortia Composition in Biofilms of Catheters. Online. In ASM Microbe 2017

KOTÁSKOVÁ, Iva, Barbora ZWINSOVÁ, Petra VÍDEŇSKÁ, Veronika HOLÁ and Tomáš FREIBERGER. Comparison of ready-to-use bioinformatic tools for 16S rRNA amplicon next-generation sequencing data analysis. Online. In International Conference on Clinical Metagenomics, Ženeva

FIEDOROVÁ, Kristýna, Juraj BOSÁK, Barbora ZWINSOVÁ, Matej LEXA, Jiří LITZMAN, Tomáš FREIBERGER and David ŠMAJS. Gastrointestinal microbiome in patients with primary immune deficiencies. Online. In Food, Microbiota and Immunity, Třešť

HANÁKOVÁ, Barbora, Jan OPPELT and Eva BUDINSKÁ. Identification of subtype specific microbiome from tumour tissue RNAseq data in colorectal cancer. Online. In 15th European Conference on Computational Biology

JENSEN, Niels F., Jjan STENVANG, Mette K. BECK, Barbora HANÁKOVÁ, Kirstine C. BELLING, Khoa N. DO, Birgitte VIUFF, Sune B. NYGARD, Ramneek GUPTA, Mads H. RASMUSSEN, Line S. TARPGAARD, Tine P. HANSEN, Eva BUDINSKÁ, Per PFEIFFER, Fred BOSMAN, Sabine TEJPAR, Arnaud ROTH, Mauro DELORENZI, Claus L. ANDERSEN, Maria U. RØMER, Nils BRÜNNER and José M.A. MOREIRA. Establishment and characterization of models of chemotherapy resistance in colorectal cancer: Towards a predictive signature of chemoresistance. Online. Molecular oncology. Oxford: Elsevier Science Inc., vol. 9, No 6, p. 1169-1185. ISSN 1574-7891. Available from: https://dx.doi.org/10.1016/j.molonc.2015.02.008