Masaryk University

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    2024

    1. BioMedical Visualization: Past Work, Current Trends, and Open Challenges
      FURMANOVÁ, Katarína, Barbora KOZLÍKOVÁ, Thomas HÖLLT, M. Eduard GRÖLLER, Bernhard PREIM and Renata Georgia RAIDOU. BioMedical Visualization: Past Work, Current Trends, and Open Challenges. Neuveden: Springer, 2024, 161 pp. ISBN 978-3-031-66788-6. Available from: https://dx.doi.org/10.1007/978-3-031-66789-3.
      URL
      RIV: Book on a specialized topic. English. Switzerland.
      Furmanová, Katarína (703 Slovakia, guarantor, belonging to the institution) -- Kozlíková, Barbora (203 Czech Republic, belonging to the institution)
      Keywords in English: Biological Visualization; Omics Visualization; Interaction Networks; Pathway Visualization; Medical Visualization; Molecular Visualization
      International impact: yes
      Reviewed: yes
      Changed by: RNDr. Katarína Furmanová, Ph.D., učo 374538. Changed: 3/10/2024 13:41.
      More: https://is.muni.cz/publication/2439998/en
    2. ProjectAnatomy: A Handy Tool for Learning Forearm Anatomy with Augmented Physicalisations
      POKOJNÁ, Hana, Barbora KOZLÍKOVÁ, Katarína FURMANOVÁ and Simone KRIGLSTEIN. ProjectAnatomy: A Handy Tool for Learning Forearm Anatomy with Augmented Physicalisations. Behaviour & Information Technology Special Issue "Data Physicalisations in the Wild". Abingdon, United Kingdom: Taylor and Francis, 2024. ISSN 1362-3001. Available from: https://dx.doi.org/10.1080/0144929X.2024.2413161.

      Keywords in English: Anatomy education, medical art, projection mapping, 3D prints, physicalisations, augmenting 3D prints
      International impact: yes
      Reviewed: yes
      Changed by: doc. RNDr. Barbora Kozlíková, Ph.D., učo 60850. Changed: 22/10/2024 19:17.
      More: https://is.muni.cz/publication/2439317/en
    3. Visual Support for the Loop Grafting Workflow on Proteins
      OPÁLENÝ, Filip, Pavol ULBRICH, Joan PLANAS IGLESIAS, Jan BYŠKA, Jan ŠTOURAČ, David BEDNÁŘ, Katarína FURMANOVÁ and Barbora KOZLÍKOVÁ. Visual Support for the Loop Grafting Workflow on Proteins. IEEE Transactions on Visualization and Computer Graphics. United States: IEEE Computer Society, 2024. ISSN 1077-2626.
      Name (in English): Visual Support for the Loop Grafting Workflow on Proteins

      Changed by: doc. RNDr. Barbora Kozlíková, Ph.D., učo 60850. Changed: 23/10/2024 21:25.
      More: https://is.muni.cz/publication/2419834/en

    2023

    1. Seeing the unseen: Comparison study of representation approaches for biochemical processes in education
      POKOJNÁ, Hana, Barbora KOZLÍKOVÁ, Drew BERRY, Simone KRIGLSTEIN and Katarína FURMANOVÁ. Seeing the unseen: Comparison study of representation approaches for biochemical processes in education. PLoS ONE. 2023, vol. 18, No 11, p. 1-27. ISSN 1932-6203. Available from: https://dx.doi.org/10.1371/journal.pone.0293592.
      URL
      RIV/00216224:14330/23:00132417 Article in a journal. English. Estonia.
      Pokojná, Hana (703 Slovakia, guarantor, belonging to the institution) -- Kozlíková, Barbora (203 Czech Republic, belonging to the institution) -- Kriglstein, Simone (40 Austria, belonging to the institution) -- Furmanová, Katarína (703 Slovakia, belonging to the institution)
      Keywords in English: Biochemical processes;abstraction;education;comparative study
      Changed by: RNDr. Pavel Šmerk, Ph.D., učo 3880. Changed: 5/9/2024 15:36.
      More: https://is.muni.cz/publication/2346202/en
    2. sMolBoxes: Dataflow Model for Molecular Dynamics Exploration
      ULBRICH, Pavol, Manuela WALDNER, Katarína FURMANOVÁ, Sérgio Manuel MARQUES, David BEDNÁŘ, Barbora KOZLÍKOVÁ and Jan BYŠKA. sMolBoxes: Dataflow Model for Molecular Dynamics Exploration. IEEE Transactions on Visualization and Computer Graphics. United States: IEEE Computer Society, 2023, vol. 29, No 1, p. 581-590. ISSN 1077-2626. Available from: https://dx.doi.org/10.1109/TVCG.2022.3209411.
      URL
      RIV/00216224:14330/23:00130033 Article in a journal. English. United States of America.
      Ulbrich, Pavol (703 Slovakia, guarantor, belonging to the institution) -- Waldner, Manuela (40 Austria) -- Furmanová, Katarína (703 Slovakia, belonging to the institution) -- Marques, Sérgio Manuel (620 Portugal, belonging to the institution) -- Bednář, David (203 Czech Republic, belonging to the institution) -- Kozlíková, Barbora (203 Czech Republic, belonging to the institution) -- Byška, Jan (203 Czech Republic, belonging to the institution)
      Keywords in English: Molecular dynamics;structure;node-based visualization;progressive analytics
      International impact: yes
      Reviewed: yes
      Changed by: Mgr. Marie Šípková, DiS., učo 437722. Changed: 25/7/2024 07:58.
      More: https://is.muni.cz/publication/2222179/en
    3. xOpat: eXplainable Open Pathology Analysis Tool
      HORÁK, Jiří, Katarína FURMANOVÁ, Barbora KOZLÍKOVÁ, Tomáš BRÁZDIL, Petr HOLUB, Martin KAČENGA, Matej GALLO, Rudolf NENUTIL, Jan BYŠKA and Vít RUSŇÁK. xOpat: eXplainable Open Pathology Analysis Tool. COMPUTER GRAPHICS FORUM. England: Wiley, 2023, vol. 42, No 3, p. 63-73. ISSN 0167-7055. Available from: https://dx.doi.org/10.1111/cgf.14812.
      URL
      Name (in English): xOpat: eXplainable Open Pathology Analysis Tool
      RIV/00216224:14330/23:00130943 Article in a journal. English. United Kingdom of Great Britain and Northern Ireland.
      Horák, Jiří (203 Czech Republic, belonging to the institution) -- Furmanová, Katarína (703 Slovakia, belonging to the institution) -- Kozlíková, Barbora (203 Czech Republic, belonging to the institution) -- Brázdil, Tomáš (203 Czech Republic, belonging to the institution) -- Holub, Petr (203 Czech Republic, belonging to the institution) -- Kačenga, Martin (703 Slovakia, belonging to the institution) -- Gallo, Matej (703 Slovakia, belonging to the institution) -- Nenutil, Rudolf (203 Czech Republic) -- Byška, Jan (203 Czech Republic, belonging to the institution) -- Rusňák, Vít (203 Czech Republic, guarantor, belonging to the institution)
      Keywords in English: Medical Imaging; Scientific Visualization; Open Pathology; Toolkit; artificial intelligence; Visual Analysis; AI explainability; GPU Rendering;
      International impact: yes
      Reviewed: yes
      Changed by: doc. RNDr. Tomáš Brázdil, Ph.D., učo 4074. Changed: 6/2/2024 21:04.
      More: https://is.muni.cz/publication/2290959/en

    2022

    1. Understanding the impact of statistical and machine learning choices on predictive models for radiotherapy
      BÖRÖNDY, Ádám, Katarína FURMANOVÁ and Renata Georgia RAIDOU. Understanding the impact of statistical and machine learning choices on predictive models for radiotherapy. Online. In Renata G. Raidou, Björn Sommer, Torsten W. Kuhlen, Michael Krone, Thomas Schultz, Hsiang-Yun Wu. Eurographics Workshop on Visual Computing for Biology and Medicine. Neuveden: The Eurographics Association, 2022, p. 65-69. ISBN 978-3-03868-177-9. Available from: https://dx.doi.org/10.2312/vcbm.20221188.
      URL
      RIV/00216224:14330/22:00126656 Proceedings paper. English. Austria.
      Furmanová, Katarína (703 Slovakia, belonging to the institution)
      Keywords in English: Visual Analytics; Life and medical sciences
      Type of proceedings: post-proceedings
      International impact: yes
      Reviewed: yes
      Changed by: RNDr. Pavel Šmerk, Ph.D., učo 3880. Changed: 6/4/2023 13:31.
      More: https://is.muni.cz/publication/2217397/en

    2021

    1. PREVIS: Predictive visual analytics of anatomical variability for radiotherapy decision support
      FURMANOVÁ, Katarína, Ludvig P MUREN, Oscar CASARES-MAGAZ, Vitali MOISEENKO, John P EINCK, Sara PILSKOG and Renata G RAIDOU. PREVIS: Predictive visual analytics of anatomical variability for radiotherapy decision support. Computers & Graphics. Elsevier Science, 2021, vol. 97, April, p. 126-138. ISSN 0097-8493. Available from: https://dx.doi.org/10.1016/j.cag.2021.04.010.
      URL
      RIV/00216224:14330/21:00124927 Article in a journal. English. United Kingdom of Great Britain and Northern Ireland.
      Furmanová, Katarína (703 Slovakia, belonging to the institution)
      Keywords in English: Medical Visualization; Visual Analytics; Comparative Visualization; Ensemble Visualization; Radiotherapy Planning; Cohort Study
      International impact: yes
      Reviewed: yes
      Changed by: RNDr. Katarína Furmanová, Ph.D., učo 374538. Changed: 3/11/2022 12:04.
      More: https://is.muni.cz/publication/1766876/en

    2020

    1. ANALYZA – Vizualizační komponenta – Visilant (ANALYZA – Visualization Component – Visilant) (software)
      REBOK, Tomáš, Michal BATKO, Milan ČERMÁK, Martin DRAŠAR, Jarešová MIROSLAVA, Barbora KOZLÍKOVÁ, Kristína ZÁKOPČANOVÁ, Pavel ZEZULA, Katarína FURMANOVÁ, Marko ŘEHÁČEK, Jozef BÁTRNA and Daniel PLAKINGER. ANALYZA – Vizualizační komponenta – Visilant (ANALYZA – Visualization Component – Visilant). 2020.
      ANALYZA – Vizualizační komponenta – Visilant
      Name (in English): ANALYZA – Visualization Component – Visilant
      RIV/00216224:14610/20:00114825 Software. Czech. Czech Republic.
      Rebok, Tomáš (203 Czech Republic, guarantor, belonging to the institution) -- Batko, Michal (203 Czech Republic, belonging to the institution) -- Čermák, Milan (203 Czech Republic, belonging to the institution) -- Drašar, Martin (203 Czech Republic, belonging to the institution) -- Kozlíková, Barbora (203 Czech Republic, belonging to the institution) -- Zákopčanová, Kristína (203 Czech Republic, belonging to the institution) -- Zezula, Pavel (203 Czech Republic, belonging to the institution) -- Furmanová, Katarína (703 Slovakia, belonging to the institution) -- Řeháček, Marko (703 Slovakia, belonging to the institution) -- Bátrna, Jozef (703 Slovakia, belonging to the institution) -- Plakinger, Daniel (703 Slovakia, belonging to the institution)
      Keywords in English: visualization; ANALYZA; Visilant
      Changed by: RNDr. Tomáš Rebok, Ph.D., učo 39685. Changed: 29/4/2021 14:17.
      More: https://is.muni.cz/publication/1736358/en
    2. DockVis: Visual Analysis of Molecular Docking Trajectories
      FURMANOVÁ, Katarína, Ondřej VÁVRA, Barbora KOZLÍKOVÁ, Jiří DAMBORSKÝ, Vojtěch VONÁSEK, David BEDNÁŘ and Jan BYŠKA. DockVis: Visual Analysis of Molecular Docking Trajectories. Computer Graphics Forum. Wiley-Blackwell, 2020, vol. 39, No 6, p. 452-464. ISSN 0167-7055. Available from: https://dx.doi.org/10.1111/cgf.14048.
      URL
      RIV/00216224:14330/20:00114201 Article in a journal. English. Switzerland.
      Furmanová, Katarína (703 Slovakia, belonging to the institution) -- Vávra, Ondřej (203 Czech Republic, belonging to the institution) -- Kozlíková, Barbora (203 Czech Republic, belonging to the institution) -- Damborský, Jiří (203 Czech Republic, belonging to the institution) -- Vonásek, Vojtěch (203 Czech Republic) -- Bednář, David (203 Czech Republic, belonging to the institution) -- Byška, Jan (203 Czech Republic, guarantor, belonging to the institution)
      Keywords in English: visual analysis; molecular docking; trajectory; ligand
      International impact: yes
      Reviewed: yes
      Changed by: Mgr. Michaela Hylsová, Ph.D., učo 211937. Changed: 17/2/2023 20:54.
      More: https://is.muni.cz/publication/1664236/en
    3. Lessons learnt from developing visual analytics applications for adaptive prostate cancer radiotherapy
      RAIDOU, Renata Georgia, Katarína FURMANOVÁ, Nicolas GROSSMANN, Oscar CASARES-MAGAZ, Vitali MOISEENKO, John P EINCK, Eduard GRÖLLER and Ludvig P MUREN. Lessons learnt from developing visual analytics applications for adaptive prostate cancer radiotherapy. Online. In Christina Gillmann, Michael Krone, Guido Reina, Thomas Wischgoll. VisGap - The Gap between Visualization Research and Visualization Software. Norrköping, Sweden: The Eurographics Association, 2020, p. 51-58. ISBN 978-3-03868-125-0. Available from: https://dx.doi.org/10.2312/visgap.20201110.
      URL
      English. Sweden.
      Keywords in English: visual analytics; radiotherapy
      International impact: yes
      Reviewed: yes
      Changed by: RNDr. Katarína Furmanová, Ph.D., učo 374538. Changed: 22/4/2021 12:54.
      More: https://is.muni.cz/publication/1737817/en
    4. Multiscale Visual Drilldown for the Analysis of Large Ensembles of Multi-Body Protein Complexes
      FURMANOVÁ, Katarína, Adam JURČÍK, Barbora KOZLÍKOVÁ, Helwig HAUSER and Jan BYŠKA. Multiscale Visual Drilldown for the Analysis of Large Ensembles of Multi-Body Protein Complexes. IEEE Transactions on Visualization and Computer Graphics. IEEE, 2020, vol. 26, No 1, p. 843-852. ISSN 1077-2626. Available from: https://dx.doi.org/10.1109/TVCG.2019.2934333.
      URL
      Name (in English): Multiscale Visual Drilldown for the Analysis of Large Ensembles of Multi-Body Protein Complexes
      RIV/00216224:14330/20:00113971 Article in a journal. English. Canada.
      Furmanová, Katarína (703 Slovakia, belonging to the institution) -- Jurčík, Adam (203 Czech Republic, belonging to the institution) -- Kozlíková, Barbora (203 Czech Republic, guarantor, belonging to the institution) -- Byška, Jan (203 Czech Republic, belonging to the institution)
      Keywords in English: Molecular Visualization; Data Filtering; Coordinated and Multiple Views
      International impact: yes
      Reviewed: yes
      Changed by: RNDr. Pavel Šmerk, Ph.D., učo 3880. Changed: 29/4/2021 07:54.
      More: https://is.muni.cz/publication/1546968/en
    5. Taggle: Combining Overview and Details in Tabular Data Visualizations
      FURMANOVÁ, Katarína, Samuel GRATZL, Holger STITZ, Thomas ZICHNER, Miroslava JAREŠOVÁ, Alexander LEX and Marc STREIT. Taggle: Combining Overview and Details in Tabular Data Visualizations. Information Visualization. 2020, vol. 19, No 2, p. 114-136. ISSN 1473-8716. Available from: https://dx.doi.org/10.1177/1473871619878085.
      URL
      RIV/00216224:14330/20:00115101 Article in a journal. English. United Kingdom of Great Britain and Northern Ireland.
      Furmanová, Katarína (703 Slovakia, belonging to the institution) -- Jarešová, Miroslava (203 Czech Republic, belonging to the institution)
      Keywords in English: visualization; tabular data
      International impact: yes
      Reviewed: yes
      Changed by: RNDr. Katarína Furmanová, Ph.D., učo 374538. Changed: 22/4/2021 19:14.
      More: https://is.muni.cz/publication/1551978/en
    6. Using multiple planning scans to predict organ shape variability during RT for prostate cancer
      FURMANOVÁ, Katarína, Renata G RAIDOU, Nicolas GROSSMANN, Oscar CASARES-MAGAZ, Vitali MOISEENKO, John P EINCK and Ludvig P MUREN. Using multiple planning scans to predict organ shape variability during RT for prostate cancer. In ESTRO 2020. 2020.

      Type of participation: active participation (giving a lecture, organization, etc.)
      International impact: yes
      Reviewed: yes
      Changed by: RNDr. Katarína Furmanová, Ph.D., učo 374538. Changed: 3/2/2021 12:11.
      More: https://is.muni.cz/publication/1737819/en
    7. VAPOR: Visual Analytics for the Exploration of Pelvic Organ Variability in Radiotherapy.
      FURMANOVÁ, Katarína, Nicolas GROSSMANN, Ludvig P. MUREN, Oscar CASARES-MAGAZ, Vitali MOISEENKO, John P. EINCK, Eduard M. GRÖLLER and Renata G. RAIDOU. VAPOR: Visual Analytics for the Exploration of Pelvic Organ Variability in Radiotherapy. Computers & Graphics. 2020, vol. 91, October 2020, p. 25-38. ISSN 0097-8493. Available from: https://dx.doi.org/10.1016/j.cag.2020.07.001.
      URL
      English. United Kingdom of Great Britain and Northern Ireland.
      Keywords in English: Medical visualization; Visual analytics; Comparative visualization; Ensemble visualization; Radiotherapy planning; Cohort study
      International impact: yes
      Reviewed: yes
      Changed by: RNDr. Katarína Furmanová, Ph.D., učo 374538. Changed: 22/4/2021 12:44.
      More: https://is.muni.cz/publication/1737797/en
    8. Visual Analysis of Protein–Protein Interaction Docking Models Using COZOID Tool
      BYŠKA, Jan, Adam JURČÍK, Katarína FURMANOVÁ, Barbora KOZLÍKOVÁ and Jan PALEČEK. Visual Analysis of Protein–Protein Interaction Docking Models Using COZOID Tool. In Stefan Canzar, Francisca Rojas Ringeling. Protein-Protein Interaction Networks. 1st ed. New York, NY: Humana Press Inc, 2020, p. 81-94. Methods in Molecular Biology, vol. 2074. ISBN 978-1-4939-9872-2. Available from: https://dx.doi.org/10.1007/978-1-4939-9873-9_7.
      URL
      RIV/00216224:14330/20:00115070 Chapter(s) of a specialized book. English. United States of America.
      Byška, Jan (203 Czech Republic, belonging to the institution) -- Jurčík, Adam (203 Czech Republic, belonging to the institution) -- Furmanová, Katarína (703 Slovakia, belonging to the institution) -- Kozlíková, Barbora (203 Czech Republic, belonging to the institution) -- Paleček, Jan (203 Czech Republic, guarantor, belonging to the institution)
      Keywords in English: Protein–protein interactions;Contact zone;Contact residue;Multiple sequence alignment;Conservation rate;Protein docking;COZOID tool;Visual selection
      International impact: yes
      Reviewed: yes
      Changed by: Mgr. Marie Šípková, DiS., učo 437722. Changed: 15/12/2020 08:44.
      More: https://is.muni.cz/publication/1550016/en

    2019

    1. DockVis: Visual Analysis of Molecular Docking Data
      FURMANOVÁ, Katarína, Barbora KOZLÍKOVÁ, Vojtěch VONÁSEK and Jan BYŠKA. DockVis: Visual Analysis of Molecular Docking Data. In Kozlíková, Barbora and Linsen, Lars and Vázquez, Pere-Pau and Lawonn, Kai and Raidou, Renata Georgia. Eurographics Workshop on Visual Computing for Biology and Medicine. Brno: The Eurographics Association, 2019, p. 113-122. ISBN 978-3-03868-081-9. Available from: https://dx.doi.org/10.2312/vcbm.20191238.
      Name (in English): DockVis: Visual Analysis of Molecular Docking Data
      RIV/00216224:14330/19:00107523 Proceedings paper. English.
      Furmanová, Katarína (703 Slovakia, guarantor, belonging to the institution) -- Kozlíková, Barbora (203 Czech Republic, belonging to the institution) -- Vonásek, Vojtěch (203 Czech Republic) -- Byška, Jan (203 Czech Republic, belonging to the institution)
      Keywords in English: protein;docking;visualization;interaction
      Type of proceedings: pre-proceedings
      International impact: yes
      Reviewed: yes
      Changed by: RNDr. Pavel Šmerk, Ph.D., učo 3880. Changed: 31/5/2022 14:24.
      More: https://is.muni.cz/publication/1546969/en
    2. Sampling-based Motion Planning for Tracking Evolution of Dynamic Tunnels in Molecular Dynamics Simulations
      VONÁSEK, Vojtěch, Adam JURČÍK, Katarína FURMANOVÁ and Barbora KOZLÍKOVÁ. Sampling-based Motion Planning for Tracking Evolution of Dynamic Tunnels in Molecular Dynamics Simulations. Journal of Intelligent & Robotic Systems. 2019, vol. 93, 3-4, p. 763-785. ISSN 0921-0296. Available from: https://dx.doi.org/10.1007/s10846-018-0877-6.
      URL
      Name (in English): Sampling-based Motion Planning for Tracking Evolution of Dynamic Tunnels in Molecular Dynamics Simulations
      RIV/00216224:14330/19:00107165 Article in a journal. English. Netherlands.
      Vonásek, Vojtěch (203 Czech Republic, guarantor) -- Jurčík, Adam (203 Czech Republic, belonging to the institution) -- Furmanová, Katarína (703 Slovakia, belonging to the institution) -- Kozlíková, Barbora (203 Czech Republic, belonging to the institution)
      Keywords in English: Sampling-based motion planning;Rapidly exploring random tree;Protein tunnel detection
      International impact: yes
      Reviewed: yes
      Changed by: RNDr. Pavel Šmerk, Ph.D., učo 3880. Changed: 29/4/2019 17:20.
      More: https://is.muni.cz/publication/1418319/en
    3. Visual Analysis of Ligand Trajectories in Molecular Dynamics
      JURČÍK, Adam, Katarína FURMANOVÁ, Jan BYŠKA, Vojtěch VONÁSEK, Ondřej VÁVRA, Pavol ULBRICH, Helwig HAUSER and Barbora KOZLÍKOVÁ. Visual Analysis of Ligand Trajectories in Molecular Dynamics. Online. In IEEE Pacific Visualization Symposium 2019. Bangkok, Thailand: IEEE, 2019, p. 212-221. ISBN 978-1-5386-9226-4. Available from: https://dx.doi.org/10.1109/PacificVis.2019.00032.
      RIV/00216224:14330/19:00107231 Proceedings paper. English. Thailand.
      Jurčík, Adam (203 Czech Republic, belonging to the institution) -- Furmanová, Katarína (703 Slovakia, belonging to the institution) -- Byška, Jan (203 Czech Republic, belonging to the institution) -- Vonásek, Vojtěch (203 Czech Republic) -- Vávra, Ondřej (203 Czech Republic, belonging to the institution) -- Ulbrich, Pavol (703 Slovakia, belonging to the institution) -- Kozlíková, Barbora (203 Czech Republic, guarantor, belonging to the institution)
      Keywords in English: trajectory;ligand;protein;molecular dynamics;visualization;visual analysis
      Type of proceedings: post-proceedings
      International impact: yes
      Reviewed: yes
      Changed by: RNDr. Pavel Šmerk, Ph.D., učo 3880. Changed: 27/4/2020 22:32.
      More: https://is.muni.cz/publication/1486438/en

    2018

    1. CAVER Analyst 2.0: Analysis and Visualization of Channels and Tunnels in Protein Structures and Molecular Dynamics Trajectories
      JURČÍK, Adam, David BEDNÁŘ, Jan BYŠKA, Sérgio Manuel MARQUES, Katarína FURMANOVÁ, Lukáš DANIEL, Piia Pauliina KOKKONEN, Jan BREZOVSKÝ, Ondřej STRNAD, Jan ŠTOURAČ, Antonín PAVELKA, Martin MANAK, Jiří DAMBORSKÝ and Barbora KOZLÍKOVÁ. CAVER Analyst 2.0: Analysis and Visualization of Channels and Tunnels in Protein Structures and Molecular Dynamics Trajectories. Bioinformatics. 2018, vol. 34, No 20, p. 3586-3588. ISSN 1367-4803. Available from: https://dx.doi.org/10.1093/bioinformatics/bty386.
      URL
      Name (in English): CAVER Analyst 2.0: Analysis and Visualization of Channels and Tunnels in Protein Structures and Molecular Dynamics Trajectories
      RIV/00216224:14330/18:00100952 Article in a journal. English. United Kingdom of Great Britain and Northern Ireland.
      Jurčík, Adam (203 Czech Republic, belonging to the institution) -- Bednář, David (203 Czech Republic, belonging to the institution) -- Byška, Jan (203 Czech Republic) -- Marques, Sérgio Manuel (620 Portugal, belonging to the institution) -- Furmanová, Katarína (703 Slovakia, belonging to the institution) -- Daniel, Lukáš (203 Czech Republic, belonging to the institution) -- Kokkonen, Piia Pauliina (246 Finland, belonging to the institution) -- Brezovský, Jan (203 Czech Republic, belonging to the institution) -- Strnad, Ondřej (203 Czech Republic, belonging to the institution) -- Štourač, Jan (203 Czech Republic, belonging to the institution) -- Pavelka, Antonín (203 Czech Republic, belonging to the institution) -- Manak, Martin (203 Czech Republic) -- Damborský, Jiří (203 Czech Republic, belonging to the institution) -- Kozlíková, Barbora (203 Czech Republic, guarantor, belonging to the institution)
      Keywords in English: protein;tunnel;software;visualization
      International impact: yes
      Reviewed: yes
      Changed by: RNDr. Pavel Šmerk, Ph.D., učo 3880. Changed: 31/5/2022 17:34.
      More: https://is.muni.cz/publication/1418320/en
    2. COZOID: COntact ZOne IDentifier for visual analysis of protein-protein interactions
      FURMANOVÁ, Katarína, Jan BYŠKA, Eduard M. GRÖLLER, Ivan VIOLA, Jan PALEČEK and Barbora KOZLÍKOVÁ. COZOID: COntact ZOne IDentifier for visual analysis of protein-protein interactions. BMC Bioinformatics. 2018, vol. 19, APR, p. 1-17. ISSN 1471-2105. Available from: https://dx.doi.org/10.1186/s12859-018-2113-6.
      RIV/00216224:14330/18:00102549 Article in a journal. English. United Kingdom of Great Britain and Northern Ireland.
      Furmanová, Katarína (703 Slovakia, belonging to the institution) -- Byška, Jan (203 Czech Republic) -- Gröller, Eduard M. (40 Austria) -- Viola, Ivan (703 Slovakia) -- Paleček, Jan (203 Czech Republic, belonging to the institution) -- Kozlíková, Barbora (203 Czech Republic, guarantor, belonging to the institution)
      Keywords in English: Contact zone;Protein-protein interaction;Visualization
      International impact: yes
      Reviewed: yes
      Changed by: RNDr. Pavel Šmerk, Ph.D., učo 3880. Changed: 27/8/2019 12:58.
      More: https://is.muni.cz/publication/1413797/en

    2017

    1. AnthroVis: Visual Analysis of 3D Mesh Ensembles for Forensic Anthropology
      FURMANOVÁ, Katarína, Petra URBANOVÁ and Barbora KOZLÍKOVÁ. AnthroVis: Visual Analysis of 3D Mesh Ensembles for Forensic Anthropology. In Vítezslav Beran, Pavel Zemcík, Ivan Viola, Jirí Bittner, Jaroslav Rozman. Proceedings of the 33rd Spring Conference on Computer Graphics. Brno, Czech Republic: ACM, 2017, p. 171-179. ISBN 978-1-4503-5107-2. Available from: https://dx.doi.org/10.1145/3154353.3154363.
      Name (in English): AnthroVis: Visual Analysis of 3D Mesh Ensembles for Forensic Anthropology
      RIV/00216224:14330/17:00097006 Proceedings paper. Informatics. English. Czech Republic.
      Furmanová, Katarína (703 Slovakia, belonging to the institution) -- Urbanová, Petra (203 Czech Republic, belonging to the institution) -- Kozlíková, Barbora (203 Czech Republic, belonging to the institution)
      Keywords in English: 3D mesh comparison; heat plot; cross-cut; forensic anthropology;
      Type of proceedings: post-proceedings
      Changed by: RNDr. Pavel Šmerk, Ph.D., učo 3880. Changed: 31/3/2021 14:57.
      More: https://is.muni.cz/publication/1383272/en
    2. Interactive Exploration of Ligand Transportation through Protein Tunnels
      FURMANOVÁ, Katarína, Miroslava JAREŠOVÁ, Jan BYŠKA, Adam JURČÍK, Julius PARULEK, Helwig HAUSER and Barbora KOZLÍKOVÁ. Interactive Exploration of Ligand Transportation through Protein Tunnels. BMC Bioinformatics. BioMed Central, 2017, vol. 18, No 22, p. 1-16. ISSN 1471-2105. Available from: https://dx.doi.org/10.1186/s12859-016-1448-0.
      URL
      RIV/00216224:14330/17:00095871 Article in a journal. Informatics. English. United Kingdom of Great Britain and Northern Ireland.
      Furmanová, Katarína (703 Slovakia, belonging to the institution) -- Jarešová, Miroslava (203 Czech Republic, belonging to the institution) -- Byška, Jan (203 Czech Republic, belonging to the institution) -- Jurčík, Adam (203 Czech Republic, belonging to the institution) -- Parulek, Julius (703 Slovakia) -- Hauser, Helwig (40 Austria) -- Kozlíková, Barbora (203 Czech Republic, guarantor, belonging to the institution)
      Keywords in English: ligand transportation;protein;visualization;visual analysis
      Changed by: RNDr. Jan Byška, Ph.D., učo 207879. Changed: 26/10/2020 18:11.
      More: https://is.muni.cz/publication/1352180/en

    2015

    1. Automated facial landmark detection, comparison and visualization
      GALVÁNEK, Marek, Katarína FURMANOVÁ, Igor CHALÁS and Jiří SOCHOR. Automated facial landmark detection, comparison and visualization. In Joaquim Jorge, Luis Paulo Santos, Roman Ďurikovič. Proceedings of the 31st Spring Conference on Computer Graphics. Bratislava, Slovakia: ACM, 2015, p. 7-14. ISBN 978-1-4503-3693-2. Available from: https://dx.doi.org/10.1145/2788539.2788540.
      Name (in English): Automated facial landmark detection, comparison and visualization
      RIV/00216224:14330/15:00082916 Proceedings paper. Informatics. English. Slovakia.
      Galvánek, Marek (703 Slovakia, belonging to the institution) -- Furmanová, Katarína (703 Slovakia, belonging to the institution) -- Chalás, Igor (703 Slovakia, belonging to the institution) -- Sochor, Jiří (203 Czech Republic, guarantor, belonging to the institution)
      Keywords in English: facial landmarks;landmark detection;facial comparison;
      Type of proceedings: post-proceedings
      International impact: yes
      Reviewed: yes
      Changed by: RNDr. Pavel Šmerk, Ph.D., učo 3880. Changed: 1/4/2021 11:56.
      More: https://is.muni.cz/publication/1299691/en
    2. FIDENTIS Analyst 1.3.2 (software)
      CHALÁS, Igor, Petra URBANOVÁ, Mikoláš JURDA, Zuzana FERKOVÁ, Katarína FURMANOVÁ, Barbora KOZLÍKOVÁ and Jiří SOCHOR. FIDENTIS Analyst 1.3.2. 2015.
      URL
      Name (in English): FIDENTIS Analyst 1.3.2
      Informatics. English. Czech Republic.
      International impact: yes
      Changed by: RNDr. Igor Chalás, učo 172798. Changed: 1/9/2017 20:42.
      More: https://is.muni.cz/publication/1131893/en
    3. Generation of variable human faces from 3D scan dataset
      CHALÁS, Igor, Zuzana FERKOVÁ, Katarína FURMANOVÁ, Jiří SOCHOR and Barbora KOZLÍKOVÁ. Generation of variable human faces from 3D scan dataset. In In Proceedings of the 7th International Conference on Games and Virtual Worlds for Serious Applications. Skovde, Sweden: IEEE Computer Society, 2015, p. 38-45. ISBN 978-1-4799-8102-1. Available from: https://dx.doi.org/10.1109/VS-GAMES.2015.7295777.
      Name (in English): Generation of variable human faces from 3D scan dataset
      RIV/00216224:14330/15:00083735 Proceedings paper. Informatics. English. Sweden.
      Chalás, Igor (703 Slovakia, guarantor, belonging to the institution) -- Ferková, Zuzana (703 Slovakia, belonging to the institution) -- Furmanová, Katarína (703 Slovakia, belonging to the institution) -- Sochor, Jiří (203 Czech Republic, belonging to the institution) -- Kozlíková, Barbora (203 Czech Republic, belonging to the institution)
      Keywords in English: facial composite; 3D face model; personal identification; crowd simulation; gaming
      International impact: yes
      Reviewed: yes
      Changed by: RNDr. Igor Chalás, učo 172798. Changed: 1/9/2017 20:58.
      More: https://is.muni.cz/publication/1310311/en
    4. Visualization Techniques for 3D Facial Comparison
      FURMANOVÁ, Katarína. Visualization Techniques for 3D Facial Comparison. In Hans-Jörg Schulz, Bodo Urban, Uwe Freiherr von Lukas. Proceedings of the International Summer School on Visual Computing 2015. Stuttgart: Fraunhofer Verlag, 2015, p. 23-33. ISBN 978-3-8396-0960-6.

      Type of proceedings: post-proceedings
      International impact: yes
      Reviewed: yes
      Changed by: RNDr. Katarína Furmanová, Ph.D., učo 374538. Changed: 14/1/2019 11:26.
      More: https://is.muni.cz/publication/1318849/en
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