Masaryk University

Publication Records

česky | in English

Filter publications

    2024

    1. Boosting predictive models and augmenting patient data with relevant genomic and pathway information
      BUOSI, Samuele, Mohan TIMILSINA, Maria TORRENTE, Mariano PROVENCIO, Dirk FEY and Vít NOVÁČEK. Boosting predictive models and augmenting patient data with relevant genomic and pathway information. Computers in Biology and Medicine. Pergamon-Elsevier Science Press, 2024, vol. 2024, No 108398, p. 1-9. ISSN 0010-4825. Available from: https://dx.doi.org/10.1016/j.compbiomed.2024.108398.
      URL
      Name (in English): Boosting predictive models and augmenting patient data with relevant genomic and pathway information
      RIV: Article in a journal. English. Netherlands.
      Nováček, Vít (203 Czech Republic, guarantor, belonging to the institution)
      Keywords in English: Non-small-cell lung cancer; Tumor recurrence prediction; Knowledge graph embedding; Machine learning; Link prediction
      International impact: yes
      Reviewed: yes
      Changed by: doc. Mgr. Bc. Vít Nováček, PhD, učo 4049. Changed: 13/9/2024 09:55.
      More: https://is.muni.cz/publication/2432079/en
    2. Machine learning estimated probability of relapse in early-stage non-small-cell lung cancer patients with aneuploidy imputation scores and knowledge graph embeddings
      BUOSI, Samuele, Mohan TIMILSINA, Adriann JANIK, Luca COSTABELLO, Maria TORRENTE, Mariano PROVENCIO, Dirk FEY and Vít NOVÁČEK. Machine learning estimated probability of relapse in early-stage non-small-cell lung cancer patients with aneuploidy imputation scores and knowledge graph embeddings. Expert Systems with Applications. Elsevier, 2024, vol. 2024, No 235, p. 121-127. ISSN 0957-4174. Available from: https://dx.doi.org/10.1016/j.eswa.2023.121127.
      URL
      Name (in English): Machine learning estimated probability of relapse in early-stage non-small-cell lung cancer patients with aneuploidy imputation scores and knowledge graph embeddings
      RIV: Article in a journal. English. Netherlands.
      Nováček, Vít (203 Czech Republic, guarantor, belonging to the institution)
      Keywords in English: Non-small-cell lung cancer; Tumor recurrence prediction; Knowledge graph embedding; Machine learning; Link prediction
      International impact: yes
      Reviewed: yes
      Changed by: RNDr. Pavel Šmerk, Ph.D., učo 3880. Changed: 22/2/2024 11:01.
      More: https://is.muni.cz/publication/2362601/en

    2023

    1. Curing Cancer with Knowledge Graphs (and other Outrageous Ideas)
      NOVACEK, Vít. Curing Cancer with Knowledge Graphs (and other Outrageous Ideas). In Knowledge Graphs and Semantic Computing Series at University of Illinois Urbana-Champaign. 2023.
      URL
      Name (in English): Curing Cancer with Knowledge Graphs (and other Outrageous Ideas)
      English. Czech Republic.
      Keywords in English: knowledge graphs; link prediction; health informatics
      Type of participation: requested lecture
      International impact: yes
      Changed by: doc. Mgr. Bc. Vít Nováček, PhD, učo 4049. Changed: 23/2/2024 10:57.
      More: https://is.muni.cz/publication/2377458/en
    2. Extraction, labeling, clustering, and semantic mapping of segments from clinical notes
      ZELINA, Petr, Jana HALÁMKOVÁ and Vít NOVÁČEK. Extraction, labeling, clustering, and semantic mapping of segments from clinical notes. IEEE TRANSACTIONS ON NANOBIOSCIENCE. UNITED STATES: IEEE-INST ELECTRICAL ELECTRONICS ENGINEERS INC, 2023, vol. 22, No 4, p. 781-788. ISSN 1536-1241. Available from: https://dx.doi.org/10.1109/TNB.2023.3275195.
      URL
      RIV/00216224:14330/23:00131334 Article in a journal. English. United States of America.
      Zelina, Petr (203 Czech Republic, guarantor, belonging to the institution) -- Halámková, Jana (203 Czech Republic, belonging to the institution) -- Nováček, Vít (203 Czech Republic, belonging to the institution)
      Keywords in English: NLP; EHR; Clinical Notes; Information Extraction; Text Classification
      International impact: yes
      Reviewed: yes
      Changed by: RNDr. Pavel Šmerk, Ph.D., učo 3880. Changed: 7/4/2024 23:08.
      More: https://is.muni.cz/publication/2300099/en
    3. Machine Learning–Assisted Recurrence Prediction for Patients With Early-Stage Non–Small-Cell Lung Cancer
      JANIK, Adrianna, Maria TORRENTE, Luca COSTABELLO, Virginia CALVO, Brian WALSH, Carlos CAMPS, Sameh K MOHAMED, Ana L ORTEGA, Vít NOVÁČEK, Bartomeu MASSUTÍ, Pasquale MINERVINI, M Rosario GARCIA CAMPELO, Edel del BARCO, Joaquim BOSCH-BARRERA, Ernestina MENASALVAS, Mohan TIMILSINA and Mariano PROVENCIO. Machine Learning–Assisted Recurrence Prediction for Patients With Early-Stage Non–Small-Cell Lung Cancer. JCO CLINICAL CANCER INFORMATICS. UNITED STATES: LIPPINCOTT WILLIAMS & WILKINS, 2023, vol. 7, e2200062, p. 1-11. ISSN 2473-4276. Available from: https://dx.doi.org/10.1200/CCI.22.00062.
      URL
      Name (in English): Machine Learning–Assisted Recurrence Prediction for Patients With Early-Stage Non–Small-Cell Lung Cancer
      RIV/00216224:14330/23:00131337 Article in a journal. English. United States of America.
      Janik, Adrianna (guarantor) -- Nováček, Vít (203 Czech Republic, belonging to the institution)
      Keywords in English: relapse prediction; machine learning; explainability; health informatics; lung cancer
      International impact: yes
      Reviewed: yes
      Changed by: RNDr. Pavel Šmerk, Ph.D., učo 3880. Changed: 10/4/2024 10:40.
      More: https://is.muni.cz/publication/2300102/en

    2022

    1. AI for Cancer Patient Empowerment - Interim Results of the AIcope Project
      NOVACEK, Vít, Marko ŘEHÁČEK, Petr ZELINA and Jana HALÁMKOVÁ. AI for Cancer Patient Empowerment - Interim Results of the AIcope Project. 2022.
      Name (in English): AI for Cancer Patient Empowerment - Interim Results of the AIcope Project
      English. Czech Republic.
      Keywords in English: patient empowement; oncology; AI
      Type of participation: requested lecture
      Changed by: doc. Mgr. Bc. Vít Nováček, PhD, učo 4049. Changed: 31/1/2023 18:30.
      More: https://is.muni.cz/publication/2251603/en
    2. An Artificial Intelligence-Based Tool for Data Analysis and Prognosis in Cancer Patients: Results from the Clarify Study
      TORRENTE, María, Pedro A SOUSA, Roberto HERNÁNDEZ, Mariola BLANCO, Virginia Calvo Ana COLLAZO, Gracinda R GUERREIRO, Beatriz NÚÑEZ, Joao PIMENTAO, Juan Cristóbal SÁNCHEZ, Manuel CAMPOS, Luca COSTABELLO, Vít NOVÁČEK, Ernestina MENASALVAS, María Esther VIDAL, Mariano PROVENCIO and Virginia CALVO. An Artificial Intelligence-Based Tool for Data Analysis and Prognosis in Cancer Patients: Results from the Clarify Study. CANCERS. SWITZERLAND: MDPI, 2022, vol. 14, No 16, p. 1-10. ISSN 2072-6694. Available from: https://dx.doi.org/10.3390/cancers14164041.
      original online article
      RIV/00216224:14330/22:00127570 Article in a journal. English. Switzerland.
      Nováček, Vít (203 Czech Republic, guarantor, belonging to the institution)
      Keywords in English: artificial intelligence; data integration; cancer patients; patient stratification; precision oncology; decision support system
      International impact: yes
      Reviewed: yes
      Changed by: RNDr. Pavel Šmerk, Ph.D., učo 3880. Changed: 6/4/2023 13:36.
      More: https://is.muni.cz/publication/2241660/en
    3. Integration of Medical and Genomic Information to Enhance Relapse Prediction in Early Stage Lung Cancer Patients
      TIMILSINA, Mohan, Dirk FEY, Adrianna JANIK, Maria TORRENTE, Mariano PROVENCIO, Alberto Cruz BERMUDEZ, Enric CARCERENY, Luca COSTABELLO, Delvys Rodrıguez ABREU, Manuel COBO, Rafael Lopez CASTRO, Reyes BERNABE, Maria GUIRADO, Pasquale MINERVINI and Vít NOVÁČEK. Integration of Medical and Genomic Information to Enhance Relapse Prediction in Early Stage Lung Cancer Patients. Online. In Proceedings of the Annual Symposium of the American Medical Informatics Association. Washington, USA: AMIA, 2022, p. 1082-1091. ISSN 1559-4076.
      URL
      Name (in English): Integration of Medical and Genomic Information to Enhance Relapse Prediction in Early Stage Lung Cancer Patients
      RIV: Proceedings paper. English. United States of America.
      Nováček, Vít (203 Czech Republic, guarantor, belonging to the institution)
      Keywords in English: relapse; lung cancer; imputation; machine learning; genomic scores
      Type of proceedings: post-proceedings
      International impact: yes
      Reviewed: yes
      Changed by: RNDr. Pavel Šmerk, Ph.D., učo 3880. Changed: 24/4/2024 14:26.
      More: https://is.muni.cz/publication/2241663/en
    4. Unsupervised extraction, labelling and clustering of segments from clinical notes
      ZELINA, Petr, Jana HALÁMKOVÁ and Vít NOVÁČEK. Unsupervised extraction, labelling and clustering of segments from clinical notes. Online. In Proceedings of IEEE International Conference on Bioinformatics and Biomedicine (BIBM). USA: IEEE, 2022, p. 1362-1368. ISBN 978-1-6654-6820-6. Available from: https://dx.doi.org/10.1109/BIBM55620.2022.9995229.
      arXiv preprint
      Name (in English): Unsupervised extraction, labelling and clustering of segments from clinical notes
      RIV/00216224:14330/22:00127605 Proceedings paper. English. United States of America.
      Zelina, Petr (203 Czech Republic, guarantor, belonging to the institution) -- Halámková, Jana (203 Czech Republic, belonging to the institution) -- Nováček, Vít (203 Czech Republic, belonging to the institution)
      Keywords in English: NLP; EHR; Clinical Notes; Information Extraction; Text Classification
      Type of proceedings: post-proceedings
      International impact: yes
      Reviewed: yes
      Changed by: Mgr. Petr Zelina, učo 469366. Changed: 3/11/2023 10:49.
      More: https://is.muni.cz/publication/2242916/en

    2021

    1. On Predicting Recurrence in Early Stage Non-small Cell Lung Cancer
      MOHAMED, Sameh K., Brian WALSH, Mohan TIMILSINA, Maria TORRENTE, Fabio FRANCO, Mariano PROVENCIO, Adrianna JANIK, Luca COSTABELLO, Pasquale MINERVINI, Pontus STENETORP and Vít NOVÁČEK. On Predicting Recurrence in Early Stage Non-small Cell Lung Cancer. Online. In Adam B. Wilcox, Randi Foraker, Kensaku Kawamoto, Yves A. Lussier, Nadine McCleary. Proceedings of AMIA 2021 Annual Symposium. San Diego: AMIA, 2021, p. 853-862. ISSN 1942-597X.
      RIV/00216224:14330/21:00125683 Proceedings paper. English. United States of America.
      Nováček, Vít (203 Czech Republic, guarantor, belonging to the institution)
      Keywords in English: machine learning; lung cancer; relapse prediction
      International impact: yes
      Reviewed: yes
      Changed by: doc. Mgr. Bc. Vít Nováček, PhD, učo 4049. Changed: 2/1/2023 10:10.
      More: https://is.muni.cz/publication/1848076/en
    2. P08. 01 Building Personalized Follow-Up Care Through AI by Bringing the Lung Cancer Patient, Data Scientist and Oncologist Together
      TORRENTE, M., F. FRANCO, V. CALVO, A. Collazo LORDUY, E. MENASALVAS, M. E. VIDAL, P. SOUSA, J. PIMENTAO, Vít NOVÁČEK, P. MINERVINI, D. FEY, L. COSTABELLO, M. POCS and M. PROVENCIO. P08. 01 Building Personalized Follow-Up Care Through AI by Bringing the Lung Cancer Patient, Data Scientist and Oncologist Together. Journal of Thoracic Oncology. Elsevier, 2021, vol. 16, No 10, p. 991-992. ISSN 1556-1380. Available from: https://dx.doi.org/10.1016/j.jtho.2021.08.294.
      URL
      RIV: Article in a journal. English. Netherlands.
      Nováček, Vít (203 Czech Republic, guarantor, belonging to the institution)
      Keywords in English: machine learning; lung cancer; relapse; relapse prediction
      International impact: yes
      Reviewed: yes
      Changed by: doc. Mgr. Bc. Vít Nováček, PhD, učo 4049. Changed: 8/11/2024 15:53.
      More: https://is.muni.cz/publication/1848074/en

    2018

    1. Lékařská fyzika a biofyzika (Medical Phasics and Biophysics)
      MORNSTEIN, Vojtěch, Vladan BERNARD, Marek DOSTÁL, Ivo HRAZDIRA, Erik STAFFA, Jaromír ŠRÁMEK and Daniel VLK. Lékařská fyzika a biofyzika (Medical Phasics and Biophysics). 1. vydání. Brno: Masarykova univerzita, 2018, 339 pp. ISBN 978-80-210-8984-6.
      Name in Czech: Lékařská fyzika a biofyzika
      Name (in English): Medical Phasics and Biophysics
      RIV/00216224:14110/18:00103937 Textbook. Czech. Czech Republic.
      Mornstein, Vojtěch (203 Czech Republic, guarantor, belonging to the institution) -- Bernard, Vladan (203 Czech Republic, belonging to the institution) -- Dostál, Marek (203 Czech Republic, belonging to the institution) -- Hrazdira, Ivo (203 Czech Republic) -- Staffa, Erik (203 Czech Republic, belonging to the institution) -- Šrámek, Jaromír (203 Czech Republic) -- Vlk, Daniel (203 Czech Republic, belonging to the institution)
      Keywords in English: Medical Physics; Biophysics; Medical specialisations; Non-medical specialisations
      Reviewed: yes
      Changed by: Soňa Böhmová, učo 232884. Changed: 12/3/2019 10:59.
      More: https://is.muni.cz/publication/1445477/en

    2007

    1. Portálová podpora Národního onkologického programu (Portal Support of National Oncology Program)
      PETRÁŠ, Miroslav, Jaroslav RÁČEK and Jana SEDLÁČKOVÁ. Portálová podpora Národního onkologického programu (Portal Support of National Oncology Program). In Tvorba softwaru 2007. Ostrava: VŠB - Technická univerzita Ostrava, 2007, p. 174 - 179. ISBN 978-80-248-1427-8.
      Name (in English): Portal Support of National Oncology Program
      RIV/00216224:14330/07:00022158 Proceedings paper. Informatics. Czech. Czech Republic.
      Petráš, Miroslav (203 Czech Republic) -- Ráček, Jaroslav (203 Czech Republic, guarantor) -- Sedláčková, Jana (203 Czech Republic)
      Keywords in English: Communication system; Medical informatics; Web portal; National oncology program
      Type of proceedings: pre-proceedings
      Reviewed: yes
      Changed by: RNDr. Jaroslav Ráček, Ph.D., učo 3444. Changed: 1/9/2007 13:17.
      More: https://is.muni.cz/publication/718968/en

    2006

    1. Komunikační systém NOP On-line
      PETRÁŠ, Miroslav and Jaroslav RÁČEK. Komunikační systém NOP On-line. In 3. letní škola aplikované informatiky. Brno: Masarykova univerzita, 2006, p. 77-82. ISBN 80-210-4146-3.
      Informatics. Czech. Czech Republic.
      Keywords in English: Communication System; Medical Informatics; Web Portal; National Oncological Program
      Type of proceedings: post-proceedings
      Reviewed: yes
      Changed by: RNDr. Jaroslav Ráček, Ph.D., učo 3444. Changed: 11/1/2007 11:00.
      More: https://is.muni.cz/publication/708530/en

    2000

    1. Co vlastně chtějí? (What do they want?)
      BOUREK, Aleš, Jiřina ŠKORPÍKOVÁ and Vojtěch MORNSTEIN. Co vlastně chtějí? (What do they want?). In Sborník abstrakt XXIII. dnů lékařské biofyziky. 1st ed. Plzeň: Lékařská fakulta UK v Plzni, 2000, p. 5. ISBN 80-238-5214-0.
      Name (in English): What do they want?
      Other medical fields. Czech. Czech Republic.
      Keywords in English: medical informatics; computer education
      Changed by: prof. RNDr. Vojtěch Mornstein, CSc., učo 2001. Changed: 23/11/2001 10:26.
      More: https://is.muni.cz/publication/377571/en
    2. Lékařská fyzika, biofyzika a informatika (Medical physics, biophysics and informatics)
      MORNSTEIN, Vojtěch, Jiřina ŠKORPÍKOVÁ, Aleš BOUREK and Ivo HRAZDIRA. Lékařská fyzika, biofyzika a informatika (Medical physics, biophysics and informatics). In Sborník abstrakt XXIII. dnů lékařské biofyziky. 1st ed. Plzeň: Lékařská fakulta UK v Plzni, 2000, p. 42-43. ISBN 80-238-5214-0.
      Name (in English): Medical physics, biophysics and informatics
      Other medical fields. Czech. Czech Republic.
      Keywords in English: medical informatics; computer education; biophysicc; medical physics
      Changed by: prof. RNDr. Vojtěch Mornstein, CSc., učo 2001. Changed: 23/11/2001 10:36.
      More: https://is.muni.cz/publication/377572/en

    1998

    1. Learning and Classifying Medical Text Documents Using the Naive Baye's Algorithm.
      ŽIŽKA, Jan and Aleš BOUREK. Learning and Classifying Medical Text Documents Using the Naive Baye's Algorithm. Brno: FI MUNI / Konvoj, Brno, 1998, 4 pp. International Workshop on Text, Speech and Dialog. ISBN 80-210-1899-2.
      URL
      Name (in English): Learning and Classifying Medical Text Documents Using the Naive Baye's Algorithm.
      RIV: Book on a specialized topic. Use of computers, robotics and its application. English.
      Keywords in English: automated text analysis; machine learning; medical informatics
      Changed by: doc. Ing. Jan Žižka, CSc., učo 2431. Changed: 22/2/2001 18:05.
      More: https://is.muni.cz/publication/255411/en
Displayed: 9/11/2024 01:02