Curriculum Vitae

Curriculum vitae

Name, first names, scientific degrees

• doc. RNDr. Kozlikova Barbora, Ph.D.

Department/Faculty/University

• Department of Visual Computing, Faculty of Informatics, Masaryk University

Function, current position

• Associate Professor

Education and academic qualifications

• 12/2011 Doctorate in Computer Science, Masaryk University. Thesis topic: Visualization techniques for static and dynamic protein molecules and their channels.
• 2004-2006 Diploma in Computer Science (M.Sc.), Masaryk University. Thesis topic: Interactive visualization of molecular models.
• 2001-2004 Diploma in Computer Science (Bc.), Masaryk University. Thesis topic: Animation techniques.

Professional experience

• since 09/2017, Associate professor at the Masaryk University.
• 07/2012 - 08/2017, Assistant professor at the Masaryk University: Research, education, supervising bachelor and master students.
• 01/2012 - 06/2012, Java programmer and analyst in Home Credit International: Design and development of enterprise applications.

Teaching activities

• Visualization, Computer Graphics API, Computational Geometry Project, Laboratory of Human-Computer Interaction, Generative design programming.

Research activities

• Research interest in molecular analysis and visualization, security visualization, visual analysis, computational geometry.

Internship and stays for the purpose of study or work

• 2008-2009: five months research stay at the Hasso-Plattner Institut at the University of Potsdam
• 2014-2015: six months research stay at the Institute of Computer Graphics and Algorithms, TU Wien
• 2015, 201: four short-term research stays in the Visualization Group at the University of Bergen, Norway
• 2017: one month research stay at the Institute of Computer Graphics and Algorithms, TU Wien
• 2008/10/01 – 2009/03/31: University of Potsdam, Potsdam, DEU

Other academic activities, research projects, grants

• Since 10/2016: member of the Academic Senate FI MU
  Ongoing projects:
• Czech Science Foundation project Methods of Identication and Visualization of Tunnels for Flexible Ligands in Dynamic Proteins (GA17-07690S)
• Ministry of the Interior of the Czech Republic project Complex analysis and Visualization of Heterogeneous Big Data (BV III/1-VS)
• International DFG-GACR project Visual Analysis of Protein-Ligand Interactions (GC18-18647J)

Non-university activities

• Short Papers Co-Chair at EuroVis 2017
• Publicity Co-Chair at BioVis 2017
• General Chair of EuroVis 2018
• General Chair of VCBM 2019
• Full Papers Co-Chair at VCBM 2019
• VisNotes co-chair at PacificVis 2020
• IPC member of IEEE SciVis, EuroVis, CGI, VCBM

Most significant professional accomplishments

• 2016: Best paper award at BioVis 2016 conference
• 2017: Honorable mention best paper award at IEEE VIS 2017 conference
• 2018: Honorable mention best paper award at IEEE VIS 2018 conference

Major publications

• SCHÄFER, Marco, Nicolas BRICH, Jan BYŠKA, Sérgio Manuel MARQUES, David BEDNÁŘ, Philipp THIEL, Barbora KOZLÍKOVÁ and Michael KRONE. InVADo: Interactive Visual Analysis of Molecular Docking Data. IEEE Transactions on Visualization and Computer Graphics. IEEE Computer Society, 2024, vol. 30, No 4, p. 1984-1997. ISSN 1077-2626. Available from: https://dx.doi.org/10.1109/TVCG.2023.3337642. URL info
• ULBRICH, Pavol, Manuela WALDNER, Katarína FURMANOVÁ, Sérgio Manuel MARQUES, David BEDNÁŘ, Barbora KOZLÍKOVÁ and Jan BYŠKA. sMolBoxes: Dataflow Model for Molecular Dynamics Exploration. IEEE Transactions on Visualization and Computer Graphics. United States: IEEE Computer Society, 2023, vol. 29, No 1, p. 581-590. ISSN 1077-2626. Available from: https://dx.doi.org/10.1109/TVCG.2022.3209411. URL info
• KUŤÁK, David, Matias Nicolás SELZER, Jan BYŠKA, María Luján GANUZA, Ivan BARIŠIĆ, Barbora KOZLÍKOVÁ and Haichao MIAO. Vivern – A Virtual Environment for Multiscale Visualization and Modeling of DNA Nanostructures. IEEE Transactions on Visualization and Computer Graphics. 2022, vol. 28, No 12, p. 4825-4838. ISSN 1077-2626. Available from: https://dx.doi.org/10.1109/TVCG.2021.3106328. URL info
• KOUŘIL, David, Tobias ISENBERG, Barbora KOZLÍKOVÁ, Miriah MEYER, Eduard GROELLER and Ivan VIOLA. HyperLabels: Browsing of Dense and Hierarchical Molecular 3D Models. IEEE Transactions on Visualization and Computer Graphics. 2021, vol. 27, No 8, p. 3493-3504. ISSN 1077-2626. Available from: https://dx.doi.org/10.1109/TVCG.2020.2975583. URL info
• ZÁKOPČANOVÁ, Kristína, Marko ŘEHÁČEK, Jozef BÁTRNA, Daniel PLAKINGER, Sergej STOPPEL and Barbora KOZLÍKOVÁ. Visilant: Visual Support for the Exploration and Analytical Process Tracking in Criminal Investigations. IEEE Transactions on Visualization and Computer Graphics. IEEE, 2021, vol. 27, No 2, p. 881-890. ISSN 1077-2626. Available from: https://dx.doi.org/10.1109/TVCG.2020.3030356. URL info
• SABANDO, María Virginia, Pavol ULBRICH, Matías SELZER, Jan BYŠKA, Jan MIČAN, Ignacio PONZONI, Axel J. SOTO, María Luján GANUZA and Barbora KOZLÍKOVÁ. ChemVA: Interactive Visual Analysis of Chemical Compound Similarity in Virtual Screening. IEEE Transactions on Visualization and Computer Graphics. IEEE, 2021, vol. 27, No 2, p. 891-901. ISSN 1077-2626. Available from: https://dx.doi.org/10.1109/TVCG.2020.3030438. URL info
• FURMANOVÁ, Katarína, Adam JURČÍK, Barbora KOZLÍKOVÁ, Helwig HAUSER and Jan BYŠKA. Multiscale Visual Drilldown for the Analysis of Large Ensembles of Multi-Body Protein Complexes. IEEE Transactions on Visualization and Computer Graphics. IEEE, 2020, vol. 26, No 1, p. 843-852. ISSN 1077-2626. Available from: https://dx.doi.org/10.1109/TVCG.2019.2934333. URL info
• JURČÍK, Adam, David BEDNÁŘ, Jan BYŠKA, Sérgio Manuel MARQUES, Katarína FURMANOVÁ, Lukáš DANIEL, Piia Pauliina KOKKONEN, Jan BREZOVSKÝ, Ondřej STRNAD, Jan ŠTOURAČ, Antonín PAVELKA, Martin MANAK, Jiří DAMBORSKÝ and Barbora KOZLÍKOVÁ. CAVER Analyst 2.0: Analysis and Visualization of Channels and Tunnels in Protein Structures and Molecular Dynamics Trajectories. Bioinformatics. 2018, vol. 34, No 20, p. 3586-3588. ISSN 1367-4803. Available from: https://dx.doi.org/10.1093/bioinformatics/bty386. URL info

2024/03/22