Detailed Information on Publication Record
2013
Geometry-based Algorithm for Detection of Asymmetric Tunnels in Protein Molecules
BYŠKA, Jan, Adam JURČÍK and Jiří SOCHORBasic information
Original name
Geometry-based Algorithm for Detection of Asymmetric Tunnels in Protein Molecules
Name in Czech
Geometrické algoritmy pro detekci asymetrických tunelů v proteinech
Authors
BYŠKA, Jan (203 Czech Republic, guarantor, belonging to the institution), Adam JURČÍK (203 Czech Republic, belonging to the institution) and Jiří SOCHOR (203 Czech Republic, belonging to the institution)
Edition
Germany, TPCG 2013, p. 17-24, 8 pp. 2013
Publisher
Eurographics Association
Other information
Language
English
Type of outcome
Stať ve sborníku
Field of Study
10201 Computer sciences, information science, bioinformatics
Country of publisher
United Kingdom of Great Britain and Northern Ireland
Confidentiality degree
není předmětem státního či obchodního tajemství
Publication form
printed version "print"
RIV identification code
RIV/00216224:14330/13:00069322
Organization unit
Faculty of Informatics
ISBN
978-3-905673-98-2
Keywords (in Czech)
voxely; protein; tunel; vizualizace
Keywords in English
voxels;protein; tunnel; computational geometry; visualization
Tags
Tags
International impact, Reviewed
Změněno: 27/11/2013 09:45, prof. Ing. Jiří Sochor, CSc.
Abstract
V originále
We present a novel geometry-based method for computing asymmetric tunnels and voids in proteins, approximating their real shape with selected precision. Our method combines ideas from Voronoi and grid based approaches for protein analysis. We represent tunnels in protein using voxel data grid which allows us to store their shape more accurately. Our algorithm employs a tunnel skeleton computed using Voronoi diagram. The skeleton allows us to perform grid computation in a bounded space, with lower time and memory demands, and easily identify and measure individual tunnels.
Links
| LG13010, research and development project |
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| MUNI/A/0750/2012, interní kód MU |
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