The Capsella rubella genome and the genomic consequences of
rapid mating system evolution

J 2013

The Capsella rubella genome and the genomic consequences of rapid mating system evolution

SLOTTE, Tanja; Khaled M. HAZZOURI; J. Arvid AGREN; Daniel KOENIG; Florian MAUMUS et. al.

Základní údaje

Originální název

The Capsella rubella genome and the genomic consequences of rapid mating system evolution

Autoři

Vydání

Nature Genetics, New York, Nature Publishing Group, 2013, 1061-4036

Další údaje

Jazyk

angličtina

Typ výsledku

Článek v odborném periodiku

Obor

Genetika a molekulární biologie

Stát vydavatele

Spojené státy

Utajení

není předmětem státního či obchodního tajemství

Odkazy

URL

Impakt faktor

Impact factor: 29.648

Kód RIV

RIV/00216224:14740/13:00066453

Organizační jednotka

Středoevropský technologický institut

DOI

https://doi.org/10.1038/ng.2669

UT WoS

000321005200022

Klíčová slova anglicky

ARABIDOPSIS-THALIANA; TRANSPOSABLE ELEMENTS; MOLECULAR EVOLUTION; RECENT SPECIATION; SEQUENCE; EXPRESSION; GENES; GRANDIFLORA; ANNOTATION; MUTATIONS

Štítky

ok, rivok

Příznaky

Mezinárodní význam, Recenzováno

Změněno: 25. 4. 2014 16:53, Olga Křížová

Anotace

V originále

The shift from outcrossing to selfing is common in flowering plants(1,2), but the genomic consequences and the speed at which they emerge remain poorly understood. An excellent model for understanding the evolution of self fertilization is provided by Capsella rubella, which became self compatible <200,000 years ago. We report a C. rubella reference genome sequence and compare RNA expression and polymorphism patterns between C. rubella and its outcrossing progenitor Capsella grandiflora. We found a clear shift in the expression of genes associated with flowering phenotypes, similar to that seen in Arabidopsis, in which self fertilization evolved about 1 million years ago. Comparisons of the two Capsella species showed evidence of rapid genome-wide relaxation of purifying selection in C. rubella without a concomitant change in transposable element abundance. Overall we document that the transition to selfing may be typified by parallel shifts in gene expression, along with a measurable reduction of purifying selection.

Návaznosti

ED1.1.00/02.0068, projekt VaV

Název: CEITEC - central european institute of technology

GBP501/12/G090, projekt VaV

Název: Evoluce a funkce komplexních genomů rostlin

Citovat

SLOTTE, Tanja; Khaled M. HAZZOURI; J. Arvid AGREN; Daniel KOENIG; Florian MAUMUS; Ya-Long GUO; Kim STEIGE; Adrian E. PLATTS; Juan S. ESCOBAR; L. Killian NEWMAN; Wei WANG; Terezie MANDÁKOVÁ; Emilio VELLO; Lisa M. SMITH; Stefan R. HENZ; Joshua STEFFEN; Shohei TAKUNO; Yaniv BRANDVAIN; Graham COOP; Peter ANDOLFATTO; Tina T. HU; Mathieu BLANCHETTE; Richard M. CLARK; Hadi QUESNEVILLE; Magnus NORDBORG; Brandon S. GAUT; Martin LYSÁK; Jerry JENKINS; Jane GRIMWOOD; Jarrod CHAPMAN; Simon PROCHNIK; Shengqiang SHU; Daniel ROKHSAR; Jeremy SCHMUTZ; Detlef WEIGEL a Stephen I. WRIGHT. The Capsella rubella genome and the genomic consequences of rapid mating system evolution. Nature Genetics. New York: Nature Publishing Group, 2013, roč. 45, č. 7, s. 831-"U165", 7 s. ISSN 1061-4036. Dostupné z: https://doi.org/10.1038/ng.2669.

@article{1126886,
   author = {Slotte, Tanja and Hazzouri, Khaled M. and Agren, J. Arvid and Koenig, Daniel and Maumus, Florian and Guo, YaandLong and Steige, Kim and Platts, Adrian E. and Escobar, Juan S. and Newman, L. Killian and Wang, Wei and Mandáková, Terezie and Vello, Emilio and Smith, Lisa M. and Henz, Stefan R. and Steffen, Joshua and Takuno, Shohei and Brandvain, Yaniv and Coop, Graham and Andolfatto, Peter and Hu, Tina T. and Blanchette, Mathieu and Clark, Richard M. and Quesneville, Hadi and Nordborg, Magnus and Gaut, Brandon S. and Lysák, Martin and Jenkins, Jerry and Grimwood, Jane and Chapman, Jarrod and Prochnik, Simon and Shu, Shengqiang and Rokhsar, Daniel and Schmutz, Jeremy and Weigel, Detlef and Wright, Stephen I.},
   article_location = {New York},
   article_number = {7},
   doi = {https://doi.org/10.1038/ng.2669},
   keywords = {ARABIDOPSIS-THALIANA; TRANSPOSABLE ELEMENTS; MOLECULAR EVOLUTION; RECENT SPECIATION; SEQUENCE; EXPRESSION; GENES; GRANDIFLORA; ANNOTATION; MUTATIONS},
   language = {eng},
   issn = {1061-4036},
   journal = {Nature Genetics},
   title = {The Capsella rubella genome and the genomic consequences of rapid mating system evolution},
   url = {http://www.nature.com/ng/journal/v45/n7/full/ng.2669.html},
   volume = {45},
   year = {2013}
}

TY  - JOUR
ID  - 1126886
AU  - Slotte, Tanja - Hazzouri, Khaled M. - Agren, J. Arvid - Koenig, Daniel - Maumus, Florian - Guo, Ya-Long - Steige, Kim - Platts, Adrian E. - Escobar, Juan S. - Newman, L. Killian - Wang, Wei - Mandáková, Terezie - Vello, Emilio - Smith, Lisa M. - Henz, Stefan R. - Steffen, Joshua - Takuno, Shohei - Brandvain, Yaniv - Coop, Graham - Andolfatto, Peter - Hu, Tina T. - Blanchette, Mathieu - Clark, Richard M. - Quesneville, Hadi - Nordborg, Magnus - Gaut, Brandon S. - Lysák, Martin - Jenkins, Jerry - Grimwood, Jane - Chapman, Jarrod - Prochnik, Simon - Shu, Shengqiang - Rokhsar, Daniel - Schmutz, Jeremy - Weigel, Detlef - Wright, Stephen I.
PY  - 2013
TI  - The Capsella rubella genome and the genomic consequences of rapid mating system evolution
JF  - Nature Genetics
VL  - 45
IS  - 7
SP  - 831-"U165"
EP  - 831-"U165"
PB  - Nature Publishing Group
SN  - 10614036
KW  - ARABIDOPSIS-THALIANA
KW  - TRANSPOSABLE ELEMENTS
KW  - MOLECULAR EVOLUTION
KW  - RECENT SPECIATION
KW  - SEQUENCE
KW  - EXPRESSION
KW  - GENES
KW  - GRANDIFLORA
KW  - ANNOTATION
KW  - MUTATIONS
UR  - http://www.nature.com/ng/journal/v45/n7/full/ng.2669.html
L2  - http://www.nature.com/ng/journal/v45/n7/full/ng.2669.html
N2  - The shift from outcrossing to selfing is common in flowering plants(1,2), but the genomic consequences and the speed at which they emerge remain poorly understood. An excellent model for understanding the evolution of self fertilization is provided by Capsella rubella, which became self compatible <200,000 years ago. We report a C. rubella reference genome sequence and compare RNA expression and polymorphism patterns between C. rubella and its outcrossing progenitor Capsella grandiflora. We found a clear shift in the expression of genes associated with flowering phenotypes, similar to that seen in Arabidopsis, in which self fertilization evolved about 1 million years ago. Comparisons of the two Capsella species showed evidence of rapid genome-wide relaxation of purifying selection in C. rubella without a concomitant change in transposable element abundance. Overall we document that the transition to selfing may be typified by parallel shifts in gene expression, along with a measurable reduction of purifying selection.
ER  -

SLOTTE, Tanja; Khaled M. HAZZOURI; J. Arvid AGREN; Daniel KOENIG; Florian MAUMUS; Ya-Long GUO; Kim STEIGE; Adrian E. PLATTS; Juan S. ESCOBAR; L. Killian NEWMAN; Wei WANG; Terezie MANDÁKOVÁ; Emilio VELLO; Lisa M. SMITH; Stefan R. HENZ; Joshua STEFFEN; Shohei TAKUNO; Yaniv BRANDVAIN; Graham COOP; Peter ANDOLFATTO; Tina T. HU; Mathieu BLANCHETTE; Richard M. CLARK; Hadi QUESNEVILLE; Magnus NORDBORG; Brandon S. GAUT; Martin LYSÁK; Jerry JENKINS; Jane GRIMWOOD; Jarrod CHAPMAN; Simon PROCHNIK; Shengqiang SHU; Daniel ROKHSAR; Jeremy SCHMUTZ; Detlef WEIGEL a Stephen I. WRIGHT. The Capsella rubella genome and the genomic consequences of rapid mating system evolution. \textit{Nature Genetics}. New York: Nature Publishing Group, 2013, roč.~45, č.~7, s.~831-''U165'', 7 s. ISSN~1061-4036. Dostupné z: https://doi.org/10.1038/ng.2669.

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