Cation-Specific Effects on Enzymatic Catalysis Driven by
Interactions at the Tunnel Mouth.

J 2013

Cation-Specific Effects on Enzymatic Catalysis Driven by Interactions at the Tunnel Mouth.

ŠTĚPÁNKOVÁ, Veronika; J. PATEROVA; Jiří DAMBORSKÝ; P. JUNGWIRTH; Radka CHALOUPKOVÁ et al.

Základní údaje

Originální název

Cation-Specific Effects on Enzymatic Catalysis Driven by Interactions at the Tunnel Mouth.

Autoři

ŠTĚPÁNKOVÁ, Veronika; J. PATEROVA; Jiří DAMBORSKÝ; P. JUNGWIRTH; Radka CHALOUPKOVÁ a J. HEYDA

Vydání

Journal of Physical Chemistry B, 2013, 1520-6106

Další údaje

Jazyk

angličtina

Typ výsledku

Článek v odborném periodiku

Obor

10600 1.6 Biological sciences

Stát vydavatele

Spojené státy

Utajení

není předmětem státního či obchodního tajemství

Impakt faktor

Impact factor: 3.377

Označené pro přenos do RIV

Ano

Kód RIV

RIV/00216224:14310/13:00066616

Organizační jednotka

Přírodovědecká fakulta

DOI

https://doi.org/10.1021/jp401506v

UT WoS

000319896800006

Klíčová slova anglicky

Tunnel Mouth; Interactions

Štítky

AKR, rivok

Příznaky

Mezinárodní význam, Recenzováno

Změněno: 29. 4. 2014 14:02, Ing. Zdeňka Rašková

Anotace

V originále

Cationic specificity which follows the Hofmeister series has been established for the catalytic efficiency of haloalkane dehalogenase LinB by a combination of molecular dynamics simulations and enzyme kinetic experiments. Simulations provided a detailed molecular picture of cation interactions with negatively charged residues on the protein surface, particularly at the tunnel mouth leading to the enzyme active site. On the basis of the binding affinities, cations were ordered as Na+ > K+ > Rb+ > Cs+. In agreement with this result, a steady-state kinetic analysis disclosed that the smaller alkali cations influence formation and productivity of enzyme–substrate complexes more efficiently than the larger ones. A subsequent systematic investigation of two LinB mutants with engineered charge in the cation-binding site revealed that the observed cation affinities are enhanced by increasing the number of negatively charged residues at the tunnel mouth, and vice versa, reduced by decreasing this number. However, the cation-specific effects are overwhelmed by strong electrostatic interactions in the former case. Interestingly, the substrate inhibition of the mutant LinB L177D in the presence of chloride salts was 7 times lower than that of LinB wild type in glycine buffer. Our work provides new insight into the mechanisms of specific cation effects on enzyme activity and suggests a potential strategy for suppression of substrate inhibition by the combination of protein and medium engineering.

Návaznosti

GAP207/12/0775, projekt VaV

Název: Strukturně-funkční vztahy haloalkan dehalogenas

Investor: Grantová agentura ČR, Structure-functional Relationships of Haloalkane Dehalogenases

Citovat

ŠTĚPÁNKOVÁ, Veronika; J. PATEROVA; Jiří DAMBORSKÝ; P. JUNGWIRTH; Radka CHALOUPKOVÁ a J. HEYDA. Cation-Specific Effects on Enzymatic Catalysis Driven by Interactions at the Tunnel Mouth. Journal of Physical Chemistry B. 2013, roč. 117, č. 21, s. 6394-6402. ISSN 1520-6106. Dostupné z: https://doi.org/10.1021/jp401506v.

@article{1137354,
   author = {Štěpánková, Veronika and Paterova, J. and Damborský, Jiří and Jungwirth, P. and Chaloupková, Radka and Heyda, J.},
   article_number = {21},
   doi = {https://doi.org/10.1021/jp401506v},
   keywords = {Tunnel Mouth; Interactions},
   language = {eng},
   issn = {1520-6106},
   journal = {Journal of Physical Chemistry B},
   title = {Cation-Specific Effects on Enzymatic Catalysis Driven by Interactions at the Tunnel Mouth.},
   volume = {117},
   year = {2013}
}

TY  - JOUR
ID  - 1137354
AU  - Štěpánková, Veronika - Paterova, J. - Damborský, Jiří - Jungwirth, P. - Chaloupková, Radka - Heyda, J.
PY  - 2013
TI  - Cation-Specific Effects on Enzymatic Catalysis Driven by Interactions at the Tunnel Mouth.
JF  - Journal of Physical Chemistry B
VL  - 117
IS  - 21
SP  - 6394-6402
EP  - 6394-6402
SN  - 15206106
KW  - Tunnel Mouth
KW  - Interactions
N2  - Cationic specificity which follows the Hofmeister series has been established for the catalytic efficiency of haloalkane dehalogenase LinB by a combination of molecular dynamics simulations and enzyme kinetic experiments. Simulations provided a detailed molecular picture of cation interactions with negatively charged residues on the protein surface, particularly at the tunnel mouth leading to the enzyme active site. On the basis of the binding affinities, cations were ordered as Na+ > K+ > Rb+ > Cs+. In agreement with this result, a steady-state kinetic analysis disclosed that the smaller alkali cations influence formation and productivity of enzyme–substrate complexes more efficiently than the larger ones. A subsequent systematic investigation of two LinB mutants with engineered charge in the cation-binding site revealed that the observed cation affinities are enhanced by increasing the number of negatively charged residues at the tunnel mouth, and vice versa, reduced by decreasing this number. However, the cation-specific effects are overwhelmed by strong electrostatic interactions in the former case. Interestingly, the substrate inhibition of the mutant LinB L177D in the presence of chloride salts was 7 times lower than that of LinB wild type in glycine buffer. Our work provides new insight into the mechanisms of specific cation effects on enzyme activity and suggests a potential strategy for suppression of substrate inhibition by the combination of protein and medium engineering.
ER  -

ŠTĚPÁNKOVÁ, Veronika; J. PATEROVA; Jiří DAMBORSKÝ; P. JUNGWIRTH; Radka CHALOUPKOVÁ a J. HEYDA. Cation-Specific Effects on Enzymatic Catalysis Driven by Interactions at the Tunnel Mouth. \textit{Journal of Physical Chemistry B}. 2013, roč.~117, č.~21, s.~6394-6402. ISSN~1520-6106. Dostupné z: https://doi.org/10.1021/jp401506v.

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