Sphingobium czechense sp nov., isolated from a
hexachlorocyclohexane dump site

J 2013

Sphingobium czechense sp nov., isolated from a hexachlorocyclohexane dump site

NIHARIKA, Neha, Hana MOSKALÍKOVÁ, Jasvinder KAUR, Fazlurrahman KHAN, Miroslava SEDLÁČKOVÁ et. al.

Základní údaje

Originální název

Sphingobium czechense sp nov., isolated from a hexachlorocyclohexane dump site

Autoři

NIHARIKA, Neha (356 Indie), Hana MOSKALÍKOVÁ (203 Česká republika), Jasvinder KAUR (356 Indie), Fazlurrahman KHAN (356 Indie), Miroslava SEDLÁČKOVÁ (203 Česká republika, domácí), Aleš HAMPL (203 Česká republika, domácí), Jiří DAMBORSKÝ (203 Česká republika, garant, domácí), Zbyněk PROKOP (203 Česká republika, domácí) a Rup LAL (356 Indie)

Vydání

International Journal of Systematic and Evolutionary Microbiology, SOC GENERAL MICROBIOLOGY, 2013, 1466-5026

Další údaje

Jazyk

angličtina

Typ výsledku

Článek v odborném periodiku

Obor

10600 1.6 Biological sciences

Stát vydavatele

Velká Británie a Severní Irsko

Utajení

není předmětem státního či obchodního tajemství

Impakt faktor

Impact factor: 2.798

Kód RIV

RIV/00216224:14310/13:00065824

Organizační jednotka

Přírodovědecká fakulta

DOI

http://dx.doi.org/10.1099/ijs.0.039396-0

UT WoS

000317170400052

Klíčová slova anglicky

LIN GENES; SPHINGOMONAS; IDENTIFICATION; DEGRADATION; ACID; MICROORGANISMS; PHYLOGENY; BACTERIA; STRAIN; SOILS

Štítky

AKR, podil, rivok

Příznaky

Mezinárodní význam, Recenzováno

Změněno: 5. 3. 2014 15:22, Ing. Mgr. Věra Pospíšilíková

Anotace

V originále

A yellow pigmented bacterial strain, designated LL01T, was isolated from hexachlorocyclohexane (HCH)-contaminated soil in Spolana Neratovice, former Czech producer of Lindane. A neighbour-joining tree based on 16S rRNA gene sequences showed that strain LL01T occupied a distinct phylogenetic position in the Sphingobium cluster, showing highest similarity with Sphingobium rhizovicinum CC-FH12-1T (98.5%). The DNA G+C content of strain LL01T was 66.1 mol%. The predominant respiratory pigment ubiquonone Q10 is present. The polar lipid profile of the strain LL01T also corresponded to those reported for other Sphingobium species (phosphatidylethanolamine, diphosphatidylglycerol, phosphatidylcholine, phosphatidylglycerol, phosphatidylmonomethylethanolamine, phosphatidyldimethylethanolamine, sphingoglycolipids), supporting its identification as member of the genus Sphingobium. Spermidine was the major polyamine observed in the cell. The results obtained after DNA-DNA hybridization, biochemical and physiological tests clearly distinguished it from closely related species of the genus Sphingobium. Therefore, strain LL01T represents a novel species of the genus Sphingobium for which the name Sphingobium czechense LL01T sp. nov. is proposed (=CCM 7979T=DSM 25410T).

Návaznosti

ED0001/01/01, projekt VaV

Název: CETOCOEN

GAP202/10/1435, projekt VaV

Název: Analýza a vizualizace proteinových struktur

Investor: Grantová agentura ČR, Analýza a vizualizace proteinových struktur

GA203/08/0114, projekt VaV

Název: Specifické iontové efekty pro proteiny v roztocích a podobné biologicky relevantní systémy.

Investor: Grantová agentura ČR, Specifické iontové efekty pro proteiny v roztocích a podobné biologicky relevantní systémy

IAA401630901, projekt VaV

Název: Evoluce substrátové specifity u enzymů aktivních s xenobiotickými látkami

Investor: Akademie věd ČR, Evoluce substrátové specifity u enzymů aktivních s xenobiotickými látkami

Citovat

NIHARIKA, Neha, Hana MOSKALÍKOVÁ, Jasvinder KAUR, Fazlurrahman KHAN, Miroslava SEDLÁČKOVÁ, Aleš HAMPL, Jiří DAMBORSKÝ, Zbyněk PROKOP a Rup LAL. Sphingobium czechense sp nov., isolated from a hexachlorocyclohexane dump site. International Journal of Systematic and Evolutionary Microbiology. SOC GENERAL MICROBIOLOGY, 2013, roč. 63, Part 2, s. 723-728. ISSN 1466-5026. Dostupné z: https://dx.doi.org/10.1099/ijs.0.039396-0.

@article{1138887,
   author = {Niharika, Neha and Moskalíková, Hana and Kaur, Jasvinder and Khan, Fazlurrahman and Sedláčková, Miroslava and Hampl, Aleš and Damborský, Jiří and Prokop, Zbyněk and Lal, Rup},
   article_number = {Part 2},
   doi = {http://dx.doi.org/10.1099/ijs.0.039396-0},
   keywords = {LIN GENES; SPHINGOMONAS; IDENTIFICATION; DEGRADATION; ACID; MICROORGANISMS; PHYLOGENY; BACTERIA; STRAIN; SOILS},
   language = {eng},
   issn = {1466-5026},
   journal = {International Journal of Systematic and Evolutionary Microbiology},
   title = {Sphingobium czechense sp nov., isolated from a hexachlorocyclohexane dump site},
   volume = {63},
   year = {2013}
}

TY  - JOUR
ID  - 1138887
AU  - Niharika, Neha - Moskalíková, Hana - Kaur, Jasvinder - Khan, Fazlurrahman - Sedláčková, Miroslava - Hampl, Aleš - Damborský, Jiří - Prokop, Zbyněk - Lal, Rup
PY  - 2013
TI  - Sphingobium czechense sp nov., isolated from a hexachlorocyclohexane dump site
JF  - International Journal of Systematic and Evolutionary Microbiology
VL  - 63
IS  - Part 2
SP  - 723-728
EP  - 723-728
PB  - SOC GENERAL MICROBIOLOGY
SN  - 14665026
KW  - LIN GENES
KW  - SPHINGOMONAS
KW  - IDENTIFICATION
KW  - DEGRADATION
KW  - ACID
KW  - MICROORGANISMS
KW  - PHYLOGENY
KW  - BACTERIA
KW  - STRAIN
KW  - SOILS
N2  - A yellow pigmented bacterial strain, designated LL01T, was isolated from hexachlorocyclohexane (HCH)-contaminated soil in Spolana Neratovice, former Czech producer of Lindane. A neighbour-joining tree based on 16S rRNA gene sequences showed that strain LL01T occupied a distinct phylogenetic position in the Sphingobium cluster, showing highest similarity with Sphingobium rhizovicinum CC-FH12-1T (98.5%). The DNA G+C content of strain LL01T was 66.1 mol%. The predominant respiratory pigment ubiquonone Q10 is present. The polar lipid profile of the strain LL01T also corresponded to those reported for other Sphingobium species (phosphatidylethanolamine, diphosphatidylglycerol, phosphatidylcholine, phosphatidylglycerol, phosphatidylmonomethylethanolamine, phosphatidyldimethylethanolamine, sphingoglycolipids), supporting its identification as member of the genus Sphingobium. Spermidine was the major polyamine observed in the cell. The results obtained after DNA-DNA hybridization, biochemical and physiological tests clearly distinguished it from closely related species of the genus Sphingobium. Therefore, strain LL01T represents a novel species of the genus Sphingobium for which the name Sphingobium czechense LL01T sp. nov. is proposed (=CCM 7979T=DSM 25410T).
ER  -

NIHARIKA, Neha, Hana MOSKALÍKOVÁ, Jasvinder KAUR, Fazlurrahman KHAN, Miroslava SEDLÁČKOVÁ, Aleš HAMPL, Jiří DAMBORSKÝ, Zbyněk PROKOP a Rup LAL. Sphingobium czechense sp nov., isolated from a hexachlorocyclohexane dump site. \textit{International Journal of Systematic and Evolutionary Microbiology}. SOC GENERAL MICROBIOLOGY, 2013, roč.~63, Part 2, s.~723-728. ISSN~1466-5026. Dostupné z: https://dx.doi.org/10.1099/ijs.0.039396-0.

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