Novosphingobium barchaimii sp nov., isolated from
hexachlorocyclohexane-contaminated soil

J 2013

Novosphingobium barchaimii sp nov., isolated from hexachlorocyclohexane-contaminated soil

NIHARIKA, Neha; Hana MOSKALÍKOVÁ; Jasvinder KAUR; Miroslava SEDLÁČKOVÁ; Aleš HAMPL et al.

Základní údaje

Originální název

Novosphingobium barchaimii sp nov., isolated from hexachlorocyclohexane-contaminated soil

Autoři

NIHARIKA, Neha; Hana MOSKALÍKOVÁ; Jasvinder KAUR; Miroslava SEDLÁČKOVÁ; Aleš HAMPL; Jiří DAMBORSKÝ; Zbyněk PROKOP a Rup LAL

Vydání

International Journal of Systematic and Evolutionary Microbiology, SOC GENERAL MICROBIOLOGY, 2013, 1466-5026

Další údaje

Jazyk

angličtina

Typ výsledku

Článek v odborném periodiku

Obor

10600 1.6 Biological sciences

Stát vydavatele

Velká Británie a Severní Irsko

Utajení

není předmětem státního či obchodního tajemství

Impakt faktor

Impact factor: 2.798

Označené pro přenos do RIV

Ano

Kód RIV

RIV/00216224:14310/13:00065825

Organizační jednotka

Přírodovědecká fakulta

DOI

https://doi.org/10.1099/ijs.0.039826-0

UT WoS

000317170400043

Klíčová slova anglicky

IDENTIFICATION; MICROORGANISMS; SPHINGOMONAS; SPHINGOBIUM; ACID

Štítky

AKR, podil, rivok

Příznaky

Mezinárodní význam, Recenzováno

Změněno: 5. 3. 2014 15:33, Ing. Mgr. Věra Pospíšilíková

Anotace

V originále

A yellow pigmented bacterial strain, designated LL02T was isolated from HCH contaminated soil from Spolana, Neratovice former Czech producer of Lindane. A neighbour-joining tree based on 16S rRNA gene sequences showed that strain LL02T occupied a distinct phylogenetic position in the Novophingobium cluster, showing the highest similarity with Novosphingobium resinovorum NCIMB 8767T (98.59%). The DNA-DNA relatedness values of strain LL02T with its phylogenetic neighbours were found to be less than 70% indicating that strain LL02T represents a novel species of the genus Novosphingobium. The DNA G+C content of strain LL02T was 67.72 plus minus 0 %. The major respiratory quinone present was ubiquinone Q10. The polar lipid profile of the strain LL02T also corresponded to those reported for other Novosphingobium species (phosphatidylethanolamine, diphosphatidylglycerol, phosphatidylcholine, phosphatidylglycerol, phosphatidylmonomethylethanolamine and sphingoglycolipids), thus supporting its identification as a member of the genus Novosphingobium.

Návaznosti

ED0001/01/01, projekt VaV

Název: CETOCOEN

GAP202/10/1435, projekt VaV

Název: Analýza a vizualizace proteinových struktur

Investor: Grantová agentura ČR, Analýza a vizualizace proteinových struktur

GA203/08/0114, projekt VaV

Název: Specifické iontové efekty pro proteiny v roztocích a podobné biologicky relevantní systémy.

Investor: Grantová agentura ČR, Specifické iontové efekty pro proteiny v roztocích a podobné biologicky relevantní systémy

IAA401630901, projekt VaV

Název: Evoluce substrátové specifity u enzymů aktivních s xenobiotickými látkami

Investor: Akademie věd ČR, Evoluce substrátové specifity u enzymů aktivních s xenobiotickými látkami

Citovat

NIHARIKA, Neha; Hana MOSKALÍKOVÁ; Jasvinder KAUR; Miroslava SEDLÁČKOVÁ; Aleš HAMPL; Jiří DAMBORSKÝ; Zbyněk PROKOP a Rup LAL. Novosphingobium barchaimii sp nov., isolated from hexachlorocyclohexane-contaminated soil. International Journal of Systematic and Evolutionary Microbiology. SOC GENERAL MICROBIOLOGY, 2013, roč. 63, Part 2, s. 667-672. ISSN 1466-5026. Dostupné z: https://doi.org/10.1099/ijs.0.039826-0.

@article{1138890,
   author = {Niharika, Neha and Moskalíková, Hana and Kaur, Jasvinder and Sedláčková, Miroslava and Hampl, Aleš and Damborský, Jiří and Prokop, Zbyněk and Lal, Rup},
   article_number = {Part 2},
   doi = {https://doi.org/10.1099/ijs.0.039826-0},
   keywords = {IDENTIFICATION; MICROORGANISMS; SPHINGOMONAS; SPHINGOBIUM; ACID},
   language = {eng},
   issn = {1466-5026},
   journal = {International Journal of Systematic and Evolutionary Microbiology},
   title = {Novosphingobium barchaimii sp nov., isolated from hexachlorocyclohexane-contaminated soil},
   volume = {63},
   year = {2013}
}

TY  - JOUR
ID  - 1138890
AU  - Niharika, Neha - Moskalíková, Hana - Kaur, Jasvinder - Sedláčková, Miroslava - Hampl, Aleš - Damborský, Jiří - Prokop, Zbyněk - Lal, Rup
PY  - 2013
TI  - Novosphingobium barchaimii sp nov., isolated from hexachlorocyclohexane-contaminated soil
JF  - International Journal of Systematic and Evolutionary Microbiology
VL  - 63
IS  - Part 2
SP  - 667-672
EP  - 667-672
PB  - SOC GENERAL MICROBIOLOGY
SN  - 14665026
KW  - IDENTIFICATION
KW  - MICROORGANISMS
KW  - SPHINGOMONAS
KW  - SPHINGOBIUM
KW  - ACID
N2  - A yellow pigmented bacterial strain, designated LL02T was isolated from HCH contaminated soil from Spolana, Neratovice former Czech producer of Lindane. A neighbour-joining tree based on 16S rRNA gene sequences showed that strain LL02T occupied a distinct phylogenetic position in the Novophingobium cluster, showing the highest similarity with Novosphingobium resinovorum NCIMB 8767T (98.59%). The DNA-DNA relatedness values of strain LL02T with its phylogenetic neighbours were found to be less than 70% indicating that strain LL02T represents a novel species of the genus Novosphingobium. The DNA G+C content of strain LL02T was 67.72 plus minus 0 %. The major respiratory quinone present was ubiquinone Q10. The polar lipid profile of the strain LL02T also corresponded to those reported for other Novosphingobium species (phosphatidylethanolamine, diphosphatidylglycerol, phosphatidylcholine, phosphatidylglycerol, phosphatidylmonomethylethanolamine and sphingoglycolipids), thus supporting its identification as a member of the genus Novosphingobium.
ER  -

NIHARIKA, Neha; Hana MOSKALÍKOVÁ; Jasvinder KAUR; Miroslava SEDLÁČKOVÁ; Aleš HAMPL; Jiří DAMBORSKÝ; Zbyněk PROKOP a Rup LAL. Novosphingobium barchaimii sp nov., isolated from hexachlorocyclohexane-contaminated soil. \textit{International Journal of Systematic and Evolutionary Microbiology}. SOC GENERAL MICROBIOLOGY, 2013, roč.~63, Part 2, s.~667-672. ISSN~1466-5026. Dostupné z: https://doi.org/10.1099/ijs.0.039826-0.

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