Sphingobium baderi sp nov., isolated from a
hexachlorocyclohexane dump site

J 2013

Sphingobium baderi sp nov., isolated from a hexachlorocyclohexane dump site

KAUR, Jasvinder; Hana MOSKALÍKOVÁ; Neha NIHARIKA; Miroslava SEDLÁČKOVÁ; Aleš HAMPL et al.

Základní údaje

Originální název

Sphingobium baderi sp nov., isolated from a hexachlorocyclohexane dump site

Autoři

KAUR, Jasvinder; Hana MOSKALÍKOVÁ; Neha NIHARIKA; Miroslava SEDLÁČKOVÁ; Aleš HAMPL; Jiří DAMBORSKÝ; Zbyněk PROKOP a Rup LAL

Vydání

International Journal of Systematic and Evolutionary Microbiology, SOC GENERAL MICROBIOLOGY, 2013, 1466-5026

Další údaje

Jazyk

angličtina

Typ výsledku

Článek v odborném periodiku

Obor

10600 1.6 Biological sciences

Stát vydavatele

Velká Británie a Severní Irsko

Utajení

není předmětem státního či obchodního tajemství

Impakt faktor

Impact factor: 2.798

Označené pro přenos do RIV

Ano

Kód RIV

RIV/00216224:14310/13:00065826

Organizační jednotka

Přírodovědecká fakulta

DOI

https://doi.org/10.1099/ijs.0.039834-0

UT WoS

000317170400044

Klíčová slova anglicky

SPHINGOMONAS; DEGRADATION; MICROORGANISMS; IDENTIFICATION; SEQUENCE; STRAIN; ACID

Štítky

AKR, podil, rivok

Příznaky

Mezinárodní význam, Recenzováno

Změněno: 5. 3. 2014 15:40, Ing. Mgr. Věra Pospíšilíková

Anotace

V originále

A gram negative, rod-shaped and white coloured bacterial strain designated LL03T, was isolated from hexachlorocyclohexane-contaminated soil in Spolana Neratovice, former Czech producer of Lindane. The strain LL03T was found to be a degrader of alfa-, gama- and delta- isomers of Hexachlorocyclohexane while no significant degradation activity was observed for beta-isomer. A neighbour-joining tree based on 16S rRNA gene sequences showed that strain LL03T occupied a distinct phylogenetic position in the Sphingobium cluster, showing the highest similarity with Sphingobium wenxiniae CC-FH12-1 (99.2%). The DNA G+C content of strain LL03T was 67.0 mol %. The DNA-DNA relatedness values of the strain LL03T with its close phylogenetic neighbours were below the threshold level of 70 %, supporting its identification as a novel species of the genus Sphingobium.

Návaznosti

ED0001/01/01, projekt VaV

Název: CETOCOEN

GAP202/10/1435, projekt VaV

Název: Analýza a vizualizace proteinových struktur

Investor: Grantová agentura ČR, Analýza a vizualizace proteinových struktur

GA203/08/0114, projekt VaV

Název: Specifické iontové efekty pro proteiny v roztocích a podobné biologicky relevantní systémy.

Investor: Grantová agentura ČR, Specifické iontové efekty pro proteiny v roztocích a podobné biologicky relevantní systémy

IAA401630901, projekt VaV

Název: Evoluce substrátové specifity u enzymů aktivních s xenobiotickými látkami

Investor: Akademie věd ČR, Evoluce substrátové specifity u enzymů aktivních s xenobiotickými látkami

Citovat

KAUR, Jasvinder; Hana MOSKALÍKOVÁ; Neha NIHARIKA; Miroslava SEDLÁČKOVÁ; Aleš HAMPL; Jiří DAMBORSKÝ; Zbyněk PROKOP a Rup LAL. Sphingobium baderi sp nov., isolated from a hexachlorocyclohexane dump site. International Journal of Systematic and Evolutionary Microbiology. SOC GENERAL MICROBIOLOGY, 2013, roč. 63, Part 2, s. 673-678. ISSN 1466-5026. Dostupné z: https://doi.org/10.1099/ijs.0.039834-0.

@article{1138893,
   author = {Kaur, Jasvinder and Moskalíková, Hana and Niharika, Neha and Sedláčková, Miroslava and Hampl, Aleš and Damborský, Jiří and Prokop, Zbyněk and Lal, Rup},
   article_number = {Part 2},
   doi = {https://doi.org/10.1099/ijs.0.039834-0},
   keywords = {SPHINGOMONAS; DEGRADATION; MICROORGANISMS; IDENTIFICATION; SEQUENCE; STRAIN; ACID},
   language = {eng},
   issn = {1466-5026},
   journal = {International Journal of Systematic and Evolutionary Microbiology},
   title = {Sphingobium baderi sp nov., isolated from a hexachlorocyclohexane dump site},
   volume = {63},
   year = {2013}
}

TY  - JOUR
ID  - 1138893
AU  - Kaur, Jasvinder - Moskalíková, Hana - Niharika, Neha - Sedláčková, Miroslava - Hampl, Aleš - Damborský, Jiří - Prokop, Zbyněk - Lal, Rup
PY  - 2013
TI  - Sphingobium baderi sp nov., isolated from a hexachlorocyclohexane dump site
JF  - International Journal of Systematic and Evolutionary Microbiology
VL  - 63
IS  - Part 2
SP  - 673-678
EP  - 673-678
PB  - SOC GENERAL MICROBIOLOGY
SN  - 14665026
KW  - SPHINGOMONAS
KW  - DEGRADATION
KW  - MICROORGANISMS
KW  - IDENTIFICATION
KW  - SEQUENCE
KW  - STRAIN
KW  - ACID
N2  - A gram negative, rod-shaped and white coloured bacterial strain designated LL03T, was isolated from hexachlorocyclohexane-contaminated soil in Spolana Neratovice, former Czech producer of Lindane. The strain LL03T was found to be a degrader of alfa-, gama- and delta- isomers of Hexachlorocyclohexane while no significant degradation activity was observed for beta-isomer. A neighbour-joining tree based on 16S rRNA gene sequences showed that strain LL03T occupied a distinct phylogenetic position in the Sphingobium cluster, showing the highest similarity with Sphingobium wenxiniae CC-FH12-1 (99.2%). The DNA G+C content of strain LL03T was 67.0 mol %. The DNA-DNA relatedness values of the strain LL03T with its close phylogenetic neighbours were below the threshold level of 70 %, supporting its identification as a novel species of the genus Sphingobium.
ER  -

KAUR, Jasvinder; Hana MOSKALÍKOVÁ; Neha NIHARIKA; Miroslava SEDLÁČKOVÁ; Aleš HAMPL; Jiří DAMBORSKÝ; Zbyněk PROKOP a Rup LAL. Sphingobium baderi sp nov., isolated from a hexachlorocyclohexane dump site. \textit{International Journal of Systematic and Evolutionary Microbiology}. SOC GENERAL MICROBIOLOGY, 2013, roč.~63, Part 2, s.~673-678. ISSN~1466-5026. Dostupné z: https://doi.org/10.1099/ijs.0.039834-0.

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