Genome size and genomic GC content evolution in the miniature
genome-sized family Lentibulariaceae

J 2014

Genome size and genomic GC content evolution in the miniature genome-sized family Lentibulariaceae

VELEBA, Adam; Petr BUREŠ; Lubomír ADAMEC; Petr ŠMARDA; Ivana LIPNEROVÁ et. al.

Základní údaje

Originální název

Genome size and genomic GC content evolution in the miniature genome-sized family Lentibulariaceae

Autoři

VELEBA, Adam (203 Česká republika, garant, domácí); Petr BUREŠ (203 Česká republika, domácí); Lubomír ADAMEC (203 Česká republika); Petr ŠMARDA (203 Česká republika, domácí); Ivana LIPNEROVÁ (203 Česká republika, domácí) a Lucie HOROVÁ (203 Česká republika, domácí)

Vydání

New Phytologist, Blackwell Science, 2014, 0028-646X

Další údaje

Jazyk

angličtina

Typ výsledku

Článek v odborném periodiku

Obor

10611 Plant sciences, botany

Stát vydavatele

Spojené státy

Utajení

není předmětem státního či obchodního tajemství

Odkazy

URL

Impakt faktor

Impact factor: 7.672

Kód RIV

RIV/00216224:14310/14:00073584

Organizační jednotka

Přírodovědecká fakulta

DOI

http://dx.doi.org/10.1111/nph.12790

UT WoS

000336970200006

EID Scopus

2-s2.0-84901610136

Klíčová slova anglicky

Lentibulariaceae; genome size evolution; genome miniaturization; genomic DNA base composition; GC content; flow cytometry; carnivorous plants; genomic models

Štítky

AKR

Příznaky

Mezinárodní význam, Recenzováno

Změněno: 13. 3. 2018 10:43, prof. RNDr. Petr Bureš, Ph.D.

Anotace

V originále

• Lentibulariaceae contains species with the smallest genome size in tracheophytes, yet data are available only for 8% of its species. This prevents understanding of the history of miniaturization events and their possible reasons. Nothing is known about the variation of genomic DNA base composition. • Genome size and genomic GC content were analyzed with flow cytometry in 119 Lentibulariaceae species. The evolution of both parameters and their correspondence with several ecological traits was tested by sequence-based phylogeny. • Genome size ranged from 1C=73 to 1C=1471 Mbp, with 19 species found to be smaller than Arabidopsis. Miniaturizations have a long history in Utricularia; they also accompany the evolution of Genlisea and two species of Pinguicula. The absence of correlation between genomic parameters and ecological variables suggests that the driving forces of miniaturization are of intrinsic nature. Genome size dynamics associates with extreme variation of GC contents (34.0%–45.1%), being the highest among tracheophyte families. The extremely low GC contents, however, must clearly have evolved with contributions from processes other than sole DNA removal. • The extreme dynamics of Lentibulariaceae genomes provides a unique opportunity for studying genome miniaturization and GC content variation. Hopefully, our study will facilitate the selection of proper model species.

Návaznosti

GAP506/11/0890, projekt VaV

Název: Evoluce kompozice DNA bazí u vyšších rostlin (Akronym: GCobsah)

Investor: Grantová agentura ČR, Evolution of base composition in land plants

GA13-29362S, projekt VaV

Název: Evoluce holocentrických chromosomů (Akronym: EvoHolo)

Investor: Grantová agentura ČR, Evoluce holocentrických chromosomů

Citovat

VELEBA, Adam; Petr BUREŠ; Lubomír ADAMEC; Petr ŠMARDA; Ivana LIPNEROVÁ a Lucie HOROVÁ. Genome size and genomic GC content evolution in the miniature genome-sized family Lentibulariaceae. New Phytologist. Blackwell Science, 2014, roč. 203, č. 1, s. 22-28. ISSN 0028-646X. Dostupné z: https://dx.doi.org/10.1111/nph.12790.

@article{1179433,
   author = {Veleba, Adam and Bureš, Petr and Adamec, Lubomír and Šmarda, Petr and Lipnerová, Ivana and Horová, Lucie},
   article_number = {1},
   doi = {http://dx.doi.org/10.1111/nph.12790},
   keywords = {Lentibulariaceae; genome size evolution; genome miniaturization; genomic DNA base composition; GC content; flow cytometry; carnivorous plants; genomic models},
   language = {eng},
   issn = {0028-646X},
   journal = {New Phytologist},
   title = {Genome size and genomic GC content evolution in the miniature genome-sized family Lentibulariaceae},
   url = {http://onlinelibrary.wiley.com/doi/10.1111/nph.12790/full},
   volume = {203},
   year = {2014}
}

TY  - JOUR
ID  - 1179433
AU  - Veleba, Adam - Bureš, Petr - Adamec, Lubomír - Šmarda, Petr - Lipnerová, Ivana - Horová, Lucie
PY  - 2014
TI  - Genome size and genomic GC content evolution in the miniature genome-sized family Lentibulariaceae
JF  - New Phytologist
VL  - 203
IS  - 1
SP  - 22-28
EP  - 22-28
PB  - Blackwell Science
SN  - 0028646X
KW  - Lentibulariaceae
KW  - genome size evolution
KW  - genome miniaturization
KW  - genomic DNA base composition
KW  - GC content
KW  - flow cytometry
KW  - carnivorous plants
KW  - genomic models
UR  - http://onlinelibrary.wiley.com/doi/10.1111/nph.12790/full
L2  - http://onlinelibrary.wiley.com/doi/10.1111/nph.12790/full
N2  - • Lentibulariaceae contains species with the smallest genome size in tracheophytes, yet data are available only for 8% of its species. This prevents understanding of the history of miniaturization events and their possible reasons. Nothing is known about the variation of genomic DNA base composition. • Genome size and genomic GC content were analyzed with flow cytometry in 119 Lentibulariaceae species. The evolution of both parameters and their correspondence with several ecological traits was tested by sequence-based phylogeny. • Genome size ranged from 1C=73 to 1C=1471 Mbp, with 19 species found to be smaller than Arabidopsis. Miniaturizations have a long history in Utricularia; they also accompany the evolution of Genlisea and two species of Pinguicula. The absence of correlation between genomic parameters and ecological variables suggests that the driving forces of miniaturization are of intrinsic nature. Genome size dynamics associates with extreme variation of GC contents (34.0%–45.1%), being the highest among tracheophyte families. The extremely low GC contents, however, must clearly have evolved with contributions from processes other than sole DNA removal. • The extreme dynamics of Lentibulariaceae genomes provides a unique opportunity for studying genome miniaturization and GC content variation. Hopefully, our study will facilitate the selection of proper model species.
ER  -

VELEBA, Adam; Petr BUREŠ; Lubomír ADAMEC; Petr ŠMARDA; Ivana LIPNEROVÁ a Lucie HOROVÁ. Genome size and genomic GC content evolution in the miniature genome-sized family Lentibulariaceae. \textit{New Phytologist}. Blackwell Science, 2014, roč.~203, č.~1, s.~22-28. ISSN~0028-646X. Dostupné z: https://dx.doi.org/10.1111/nph.12790.

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