Cardamine hirsuta: a versatile genetic system for comparative
studies

J 2014

Cardamine hirsuta: a versatile genetic system for comparative studies

HAY, Angela S.; Bjorn PIEPER; Elizabeth COOKE; Terezie MANDÁKOVÁ; Maria CARTOLANO et al.

Základní údaje

Originální název

Cardamine hirsuta: a versatile genetic system for comparative studies

Autoři

Vydání

The Plant Journal, Hoboken (USA), Blackwell Science, 2014, 0960-7412

Další údaje

Jazyk

angličtina

Typ výsledku

Článek v odborném periodiku

Obor

Genetika a molekulární biologie

Stát vydavatele

Spojené státy

Utajení

není předmětem státního či obchodního tajemství

Odkazy

URL

Impakt faktor

Impact factor: 5.972

Označené pro přenos do RIV

Ano

Kód RIV

RIV/00216224:14740/14:00074132

Organizační jednotka

Středoevropský technologický institut

Klíčová slova anglicky

ARABIDOPSIS-THALIANA; SHADE AVOIDANCE; ARABIS-ALPINA; GENOME SIZE; BRASSICACEAE; EVOLUTION; DIVERSITY; EXPRESSION; DROSOPHILA; PATTERNS

Štítky

kontrola MP, MP, rivok

Příznaky

Mezinárodní význam, Recenzováno

Změněno: 26. 11. 2014 08:12, Martina Prášilová

Anotace

V originále

A major goal in biology is to identify the genetic basis for phenotypic diversity. This goal underpins research in areas as diverse as evolutionary biology, plant breeding and human genetics. A limitation for this research is no longer the availability of sequence information but the development of functional genetic tools to understand the link between changes in sequence and phenotype. Here we describe Cardamine hirsuta, a close relative of the reference plant Arabidopsis thaliana, as an experimental system in which genetic and transgenic approaches can be deployed effectively for comparative studies. We present high-resolution genetic and cytogenetic maps for C.hirsuta and show that the genome structure of C.hirsuta closely resembles the eight chromosomes of the ancestral crucifer karyotype and provides a good reference point for comparative genome studies across the Brassicaceae. We compared morphological and physiological traits between C.hirsuta and A.thaliana and analysed natural variation in stamen number in which lateral stamen loss is a species characteristic of C.hirsuta. We constructed a set of recombinant inbred lines and detected eight quantitative trait loci that can explain stamen number variation in this population. We found clear phylogeographic structure to the genetic variation in C.hirsuta, thus providing a context within which to address questions about evolutionary changes that link genotype with phenotype and the environment.

Návaznosti

GAP501/10/1014, projekt VaV

Název: Evoluce genomu alopolyploidních řeřišnic (Cardamine) rozdílného fylogenetického stáří

Investor: Grantová agentura ČR, Evoluce genomu alopolyploidních řeřišnic (Cardamine) rozdílného fylogenetického stáří

Citovat

HAY, Angela S.; Bjorn PIEPER; Elizabeth COOKE; Terezie MANDÁKOVÁ; Maria CARTOLANO; Alexander D. TATTERSALL; Raffaele D. IOIO; Simon J. MCGOWAN; Michalis BARKOULAS; Carla GALINHA; Madlen I. RAST; Hugo HOFHUIS; Christiane THEN; Jörg PLIESKE; Martin GANAL; Richard MOTT; Jaime F. MARTINEZ- GARCIA; Mark A. CARINE; Robert W. SCOTLAND; Xiangchao GAN; Dmitry A. FILATOV; Martin LYSÁK a Miltos TSIANTIS. Cardamine hirsuta: a versatile genetic system for comparative studies. The Plant Journal. Hoboken (USA): Blackwell Science, 2014, roč. 78, č. 1, s. 1-15. ISSN 0960-7412. Dostupné z: https://doi.org/10.1111/tpj.12447.

@article{1210520,
   author = {Hay, Angela S. and Pieper, Bjorn and Cooke, Elizabeth and Mandáková, Terezie and Cartolano, Maria and Tattersall, Alexander D. and Ioio, Raffaele D. and McGowan, Simon J. and Barkoulas, Michalis and Galinha, Carla and Rast, Madlen I. and Hofhuis, Hugo and Then, Christiane and Plieske, Jörg and Ganal, Martin and Mott, Richard and Martinezand Garcia, Jaime F. and Carine, Mark A. and Scotland, Robert W. and Gan, Xiangchao and Filatov, Dmitry A. and Lysák, Martin and Tsiantis, Miltos},
   article_location = {Hoboken (USA)},
   article_number = {1},
   doi = {https://doi.org/10.1111/tpj.12447},
   keywords = {ARABIDOPSIS-THALIANA; SHADE AVOIDANCE; ARABIS-ALPINA; GENOME SIZE; BRASSICACEAE; EVOLUTION; DIVERSITY; EXPRESSION; DROSOPHILA; PATTERNS},
   language = {eng},
   issn = {0960-7412},
   journal = {The Plant Journal},
   title = {Cardamine hirsuta: a versatile genetic system for comparative studies},
   url = {http://onlinelibrary.wiley.com/doi/10.1111/tpj.12447/abstract},
   volume = {78},
   year = {2014}
}

TY  - JOUR
ID  - 1210520
AU  - Hay, Angela S. - Pieper, Bjorn - Cooke, Elizabeth - Mandáková, Terezie - Cartolano, Maria - Tattersall, Alexander D. - Ioio, Raffaele D. - McGowan, Simon J. - Barkoulas, Michalis - Galinha, Carla - Rast, Madlen I. - Hofhuis, Hugo - Then, Christiane - Plieske, Jörg - Ganal, Martin - Mott, Richard - Martinez- Garcia, Jaime F. - Carine, Mark A. - Scotland, Robert W. - Gan, Xiangchao - Filatov, Dmitry A. - Lysák, Martin - Tsiantis, Miltos
PY  - 2014
TI  - Cardamine hirsuta: a versatile genetic system for comparative studies
JF  - The Plant Journal
VL  - 78
IS  - 1
SP  - 1-15
EP  - 1-15
PB  - Blackwell Science
SN  - 09607412
KW  - ARABIDOPSIS-THALIANA
KW  - SHADE AVOIDANCE
KW  - ARABIS-ALPINA
KW  - GENOME SIZE
KW  - BRASSICACEAE
KW  - EVOLUTION
KW  - DIVERSITY
KW  - EXPRESSION
KW  - DROSOPHILA
KW  - PATTERNS
UR  - http://onlinelibrary.wiley.com/doi/10.1111/tpj.12447/abstract
L2  - http://onlinelibrary.wiley.com/doi/10.1111/tpj.12447/abstract
N2  - A major goal in biology is to identify the genetic basis for phenotypic diversity. This goal underpins research in areas as diverse as evolutionary biology, plant breeding and human genetics. A limitation for this research is no longer the availability of sequence information but the development of functional genetic tools to understand the link between changes in sequence and phenotype. Here we describe Cardamine hirsuta, a close relative of the reference plant Arabidopsis thaliana, as an experimental system in which genetic and transgenic approaches can be deployed effectively for comparative studies. We present high-resolution genetic and cytogenetic maps for C.hirsuta and show that the genome structure of C.hirsuta closely resembles the eight chromosomes of the ancestral crucifer karyotype and provides a good reference point for comparative genome studies across the Brassicaceae. We compared morphological and physiological traits between C.hirsuta and A.thaliana and analysed natural variation in stamen number in which lateral stamen loss is a species characteristic of C.hirsuta. We constructed a set of recombinant inbred lines and detected eight quantitative trait loci that can explain stamen number variation in this population. We found clear phylogeographic structure to the genetic variation in C.hirsuta, thus providing a context within which to address questions about evolutionary changes that link genotype with phenotype and the environment.
ER  -

HAY, Angela S.; Bjorn PIEPER; Elizabeth COOKE; Terezie MANDÁKOVÁ; Maria CARTOLANO; Alexander D. TATTERSALL; Raffaele D. IOIO; Simon J. MCGOWAN; Michalis BARKOULAS; Carla GALINHA; Madlen I. RAST; Hugo HOFHUIS; Christiane THEN; Jörg PLIESKE; Martin GANAL; Richard MOTT; Jaime F. MARTINEZ- GARCIA; Mark A. CARINE; Robert W. SCOTLAND; Xiangchao GAN; Dmitry A. FILATOV; Martin LYSÁK a Miltos TSIANTIS. Cardamine hirsuta: a versatile genetic system for comparative studies. \textit{The Plant Journal}. Hoboken (USA): Blackwell Science, 2014, roč.~78, č.~1, s.~1-15. ISSN~0960-7412. Dostupné z: https://doi.org/10.1111/tpj.12447.

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