E-photosynthesis: a comprehensive modeling approach to
understand chlorophyll fluorescence transients and other
complex dynamic features of photosynthesis in fluctuating light

J 2007

E-photosynthesis: a comprehensive modeling approach to understand chlorophyll fluorescence transients and other complex dynamic features of photosynthesis in fluctuating light

NEDBAL, Ladislav; Jan ČERVENÝ; U RASCHER a H SCHMIDT

Základní údaje

Originální název

E-photosynthesis: a comprehensive modeling approach to understand chlorophyll fluorescence transients and other complex dynamic features of photosynthesis in fluctuating light

Autoři

NEDBAL, Ladislav; Jan ČERVENÝ; U RASCHER a H SCHMIDT

Vydání

PHOTOSYNTHESIS RESEARCH, DORDRECHT, SPRINGER, 2007, 0166-8595

Další údaje

Jazyk

angličtina

Typ výsledku

Článek v odborném periodiku

Utajení

není předmětem státního či obchodního tajemství

Impakt faktor

Impact factor: 2.139

Označené pro přenos do RIV

DOI

https://doi.org/10.1007/s11120-007-9178-9

UT WoS

000248913300021

Klíčová slova anglicky

chlorophyll fluorescence emission; forced oscillations; non-linearity; Photosystem II; system biology; system decomposition; model reduction

Příznaky

Mezinárodní význam, Recenzováno

Změněno: 28. 11. 2014 14:05, Ing. Jan Červený, Ph.D.

Anotace

V originále

Plants are exposed to a temporally and spatially heterogeneous environment, and photosynthesis is well adapted to these fluctuations. Understanding of the complex, non-linear dynamics of photosynthesis in fluctuating light requires novel-modeling approaches that involve not only the primary light and dark biochemical reactions, but also networks of regulatory interactions. This requirement exceeds the capacity of the existing molecular models that are typically reduced to describe a partial process, dynamics of a specific complex or its particular dynamic feature. We propose a concept of comprehensive model that would represent an internally consistent, integral framework combining information on the reduced models that led to its construction. This review explores approaches and tools that exist in engineering, mathematics, and in other domains of biology that can be used to develop a comprehensive model of photosynthesis. Equally important, we investigated techniques by which one can rigorously reduce such a comprehensive model to models of low dimensionality, which preserve dynamic features of interest and, thus, contribute to a better understanding of photosynthesis under natural and thus fluctuating conditions. The web-based platform www.e-photosynthesis.org is introduced as an arena where these concepts and tools are being introduced and tested.

Citovat

NEDBAL, Ladislav; Jan ČERVENÝ; U RASCHER a H SCHMIDT. E-photosynthesis: a comprehensive modeling approach to understand chlorophyll fluorescence transients and other complex dynamic features of photosynthesis in fluctuating light. PHOTOSYNTHESIS RESEARCH. DORDRECHT: SPRINGER, 2007, roč. 93, 1-3, s. 223-234. ISSN 0166-8595. Dostupné z: https://doi.org/10.1007/s11120-007-9178-9.

@article{1210757,
   author = {Nedbal, Ladislav and Červený, Jan and Rascher, U and Schmidt, H},
   article_location = {DORDRECHT},
   article_number = {1-3},
   doi = {https://doi.org/10.1007/s11120-007-9178-9},
   keywords = {chlorophyll fluorescence emission; forced oscillations; non-linearity; Photosystem II; system biology; system decomposition; model reduction},
   language = {eng},
   issn = {0166-8595},
   journal = {PHOTOSYNTHESIS RESEARCH},
   title = {E-photosynthesis: a comprehensive modeling approach to understand chlorophyll fluorescence transients and other complex dynamic features of photosynthesis in fluctuating light},
   volume = {93},
   year = {2007}
}

TY  - JOUR
ID  - 1210757
AU  - Nedbal, Ladislav - Červený, Jan - Rascher, U - Schmidt, H
PY  - 2007
TI  - E-photosynthesis: a comprehensive modeling approach to understand chlorophyll fluorescence transients and other complex dynamic features of photosynthesis in fluctuating light
JF  - PHOTOSYNTHESIS RESEARCH
VL  - 93
IS  - 1-3
SP  - 223-234
EP  - 223-234
PB  - SPRINGER
SN  - 01668595
KW  - chlorophyll fluorescence emission
KW  - forced oscillations
KW  - non-linearity
KW  - Photosystem II
KW  - system biology
KW  - system decomposition
KW  - model reduction
N2  - Plants are exposed to a temporally and spatially heterogeneous environment, and photosynthesis is well adapted to these fluctuations. Understanding of the complex, non-linear dynamics of photosynthesis in fluctuating light requires novel-modeling approaches that involve not only the primary light and dark biochemical reactions, but also networks of regulatory interactions. This requirement exceeds the capacity of the existing molecular models that are typically reduced to describe a partial process, dynamics of a specific complex or its particular dynamic feature. We propose a concept of comprehensive model that would represent an internally consistent, integral framework combining information on the reduced models that led to its construction. This review explores approaches and tools that exist in engineering, mathematics, and in other domains of biology that can be used to develop a comprehensive model of photosynthesis. Equally important, we investigated techniques by which one can rigorously reduce such a comprehensive model to models of low dimensionality, which preserve dynamic features of interest and, thus, contribute to a better understanding of photosynthesis under natural and thus fluctuating conditions. The web-based platform www.e-photosynthesis.org is introduced as an arena where these concepts and tools are being introduced and tested.
ER  -

NEDBAL, Ladislav; Jan ČERVENÝ; U RASCHER a H SCHMIDT. E-photosynthesis: a comprehensive modeling approach to understand chlorophyll fluorescence transients and other complex dynamic features of photosynthesis in fluctuating light. \textit{PHOTOSYNTHESIS RESEARCH}. DORDRECHT: SPRINGER, 2007, roč.~93, 1-3, s.~223-234. ISSN~0166-8595. Dostupné z: https://doi.org/10.1007/s11120-007-9178-9.

Přehled o publikaci