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@proceedings{1314355,
author = {Troják, Matej and Děd, Tadeáš and Šafránek, David and Klement, Matej and Červený, Jan and Brim, Luboš},
booktitle = {13th Conference on Computational Methods in Systems Biology},
keywords = {formal specification; biological systems; systems biology; rule-based language},
language = {eng},
title = {Biochemical Space: A Language for Formal Description and Annotation of Complex Biological Processes},
year = {2015}
}
TY - CONF
ID - 1314355
AU - Troják, Matej - Děd, Tadeáš - Šafránek, David - Klement, Matej - Červený, Jan - Brim, Luboš
PY - 2015
TI - Biochemical Space: A Language for Formal Description and Annotation of Complex Biological Processes
KW - formal specification
KW - biological systems
KW - systems biology
KW - rule-based language
N2 - Biochemical Space (BCS) is a novel framework for practical description of complex biological processes. It is developed as a part of Comprehensive Modelling Platform (CMP) -- a web-based platform for modelling and analysis of biological processes. In the context of CMP, Biochemical Space glues together complicated quantitative models with an easy-to-understand but yet formal and compact qualitative description. BCS allows to specify formal and well-annotated reaction networks of chemical entities and elemental reactions onto which the mathematical models are projected. BCS is supported by a Biochemical Space Language (BCSL) that combines state-of-the-art rule-based techniques with meta-data formats developed in well-known annotation databases.
ER -
TROJÁK, Matej, Tadeáš DĚD, David ŠAFRÁNEK, Matej KLEMENT, Jan ČERVENÝ and Luboš BRIM. Biochemical Space: A Language for Formal Description and Annotation of Complex Biological Processes. In \textit{13th Conference on Computational Methods in Systems Biology}. 2015.
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