chromDraw: an R package for visualization of linear and
circular karyotypes

J 2016

chromDraw: an R package for visualization of linear and circular karyotypes

JANEČKA, Jan a Martin LYSÁK

Základní údaje

Originální název

chromDraw: an R package for visualization of linear and circular karyotypes

Název česky

chromDraw: R balíček pro lineární a církulární vizualizaci karyotypů

Autoři

JANEČKA, Jan a Martin LYSÁK

Vydání

Chromosome Research, Dordrecht, Springer, 2016, 0967-3849

Další údaje

Jazyk

angličtina

Typ výsledku

Článek v odborném periodiku

Obor

10600 1.6 Biological sciences

Stát vydavatele

Nizozemské království

Utajení

není předmětem státního či obchodního tajemství

Odkazy

URL

Impakt faktor

Impact factor: 2.385

Označené pro přenos do RIV

Ano

Kód RIV

RIV/00216224:14740/16:00087797

Organizační jednotka

Středoevropský technologický institut

Klíčová slova česky

Vizualizace; chromosom; karyotyp; R

Klíčová slova anglicky

Visualization; Chromosome; Karyotype; R

Štítky

rivok

Příznaky

Mezinárodní význam, Recenzováno

Změněno: 6. 10. 2017 15:51, Mgr. Eva Špillingová

Anotace

V originále

Species-specific sets of chromosomes-karyotypes-are traditionally depicted as linear ideograms with individual chromosomes represented by vertical bars. However, linear visualization has its limitations when the shared collinearity and/or chromosomal rearrangements differentiating two or more karyotypes need to be demonstrated. In these instances, circular visualization might provide easier comprehension and interpretation of inter-species chromosomal collinearity. The chromDraw graphical tool was developed as a user-friendly graphical tool for visualizing both linear and circular karyotypes based on the same input data matrix. The output graphics, saved in two different formats (EPS and SVG), can be easily imported to and modified in presentation and image-editing computer programs. The tool is freely distributed under GNU General Public License (GPL) and can be installed from Bioconductor or from the chromDraw home page.

Návaznosti

EE2.3.20.0189, projekt VaV

Název: Rozvoj výzkumné excelence v oblasti evoluční cytogenomiky, epigenetiky a buněčné signalizace

GBP501/12/G090, projekt VaV

Název: Evoluce a funkce komplexních genomů rostlin

Citovat

JANEČKA, Jan a Martin LYSÁK. chromDraw: an R package for visualization of linear and circular karyotypes. Chromosome Research. Dordrecht: Springer, 2016, roč. 24, č. 2, s. 217-223. ISSN 0967-3849. Dostupné z: https://doi.org/10.1007/s10577-015-9513-5.

@article{1333931,
   author = {Janečka, Jan and Lysák, Martin},
   article_location = {Dordrecht},
   article_number = {2},
   doi = {https://doi.org/10.1007/s10577-015-9513-5},
   keywords = {Visualization; Chromosome; Karyotype; R},
   language = {eng},
   issn = {0967-3849},
   journal = {Chromosome Research},
   title = {chromDraw: an R package for visualization of linear and circular karyotypes},
   url = {http://link.springer.com/article/10.1007/s10577-015-9513-5},
   volume = {24},
   year = {2016}
}

TY  - JOUR
ID  - 1333931
AU  - Janečka, Jan - Lysák, Martin
PY  - 2016
TI  - chromDraw: an R package for visualization of linear and circular karyotypes
JF  - Chromosome Research
VL  - 24
IS  - 2
SP  - 217-223
EP  - 217-223
PB  - Springer
SN  - 09673849
KW  - Visualization
KW  - Chromosome
KW  - Karyotype
KW  - R
UR  - http://link.springer.com/article/10.1007/s10577-015-9513-5
L2  - http://link.springer.com/article/10.1007/s10577-015-9513-5
N2  - Species-specific sets of chromosomes-karyotypes-are traditionally depicted as linear ideograms with individual chromosomes represented by vertical bars. However, linear visualization has its limitations when the shared collinearity and/or chromosomal rearrangements differentiating two or more karyotypes need to be demonstrated. In these instances, circular visualization might provide easier comprehension and interpretation of inter-species chromosomal collinearity. The chromDraw graphical tool was developed as a user-friendly graphical tool for visualizing both linear and circular karyotypes based on the same input data matrix. The output graphics, saved in two different formats (EPS and SVG), can be easily imported to and modified in presentation and image-editing computer programs. The tool is freely distributed under GNU General Public License (GPL) and can be installed from Bioconductor or from the chromDraw home page.
ER  -

JANEČKA, Jan a Martin LYSÁK. chromDraw: an R package for visualization of linear and circular karyotypes. \textit{Chromosome Research}. Dordrecht: Springer, 2016, roč.~24, č.~2, s.~217-223. ISSN~0967-3849. Dostupné z: https://doi.org/10.1007/s10577-015-9513-5.

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