Tools and data services registry: a community effort to document bioinformatics resources
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ISON, Jon; Kristoffer RAPACKI; Herve MENAGER; Matus KALAS; Emil RYDZA; Piotr CHMURA; Christian ANTHON; Niall BEARD; Karel BERKA; Dan BOLSER; Tim BOOTH; Anthony BRETAUDEAU; Jan BREZOVSKÝ; Rita CASADIO; Gianni CESARENI; Frederik COPPENS; Michael CORNELL; Gianmauro CUCCURU; Kristian DAVIDSEN; Gianluca DELLA VEDOVA; Tunca DOGAN; Olivia DOPPELT-AZEROUAL; Laura EMERY; Elisabeth GASTEIGER; Thomas GATTER; Tatyana GOLDBERG; Marie GROSJEAN; Bjoern GRUNING; Manuela HELMER-CITTERICH; Hans IENASESCU; Vassilios IOANNIDIS; Martin Closter JESPERSEN; Rafael JIMENEZ; Nick JUTY; Peter JUVAN; Maximilian KOCH; Camille LAIBE; Jing-Woei LI; Luana LICATA; Fabien MAREUIL; Ivan MICETIC; Rune Mollegaard FRIBORG; Sebastien MORETTI; Chris MORRIS; Steffen MOLLER; Aleksandra NENADIC; Hedi PETERSON; Giuseppe PROFITI; Peter RICE; Paolo ROMANO; Paola RONCAGLIA; Rabie SAIDI; Andrea SCHAFFERHANS; Veit SCHWAMMLE; Callum SMITH; Maria Maddalena SPEROTTO; Heinz STOCKINGER; Radka SVOBODOVÁ VAŘEKOVÁ; Silvio C. E. TOSATTO; Victor DE LA TORRE; Paolo UVA; Allegra VIA; Guy YACHDAV; Federico ZAMBELLI; Gert VRIEND; Burkhard ROST; Helen PARKINSON; Peter LONGREEN a Soren BRUNAK
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Nucleic Acids Research, Oxford, Oxford University Press, 2016, 0305-1048
Life sciences are yielding huge data sets that underpin scientific discoveries fundamental to improvement in human health, agriculture and the environment. In support of these discoveries, a plethora of databases and tools are deployed, in technically complex and diverse implementations, across a spectrum of scientific disciplines. The corpus of documentation of these resources is fragmented across the Web, with much redundancy, and has lacked a common standard of information. The outcome is that scientists must often struggle to find, understand, compare and use the best resources for the task at hand. Here we present a community-driven curation effort, supported by ELIXIR-the European infrastructure for biological information-that aspires to a comprehensive and consistent registry of information about bioinformatics resources. The sustainable upkeep of this Tools and Data Services Registry is assured by a curation effort driven by and tailored to local needs, and shared amongst a network of engaged partners. As of November 2015, the registry includes 1785 resources, with depositions from 126 individual registrations including 52 institutional providers and 74 individuals. With community support, the registry can become a standard for dissemination of information about bioinformatics resources: we welcome everyone to join us in this common endeavour. The registry is freely available at https://bio.tools.
ISON, Jon; Kristoffer RAPACKI; Herve MENAGER; Matus KALAS; Emil RYDZA; Piotr CHMURA; Christian ANTHON; Niall BEARD; Karel BERKA; Dan BOLSER; Tim BOOTH; Anthony BRETAUDEAU; Jan BREZOVSKÝ; Rita CASADIO; Gianni CESARENI; Frederik COPPENS; Michael CORNELL; Gianmauro CUCCURU; Kristian DAVIDSEN; Gianluca DELLA VEDOVA; Tunca DOGAN; Olivia DOPPELT-AZEROUAL; Laura EMERY; Elisabeth GASTEIGER; Thomas GATTER; Tatyana GOLDBERG; Marie GROSJEAN; Bjoern GRUNING; Manuela HELMER-CITTERICH; Hans IENASESCU; Vassilios IOANNIDIS; Martin Closter JESPERSEN; Rafael JIMENEZ; Nick JUTY; Peter JUVAN; Maximilian KOCH; Camille LAIBE; Jing-Woei LI; Luana LICATA; Fabien MAREUIL; Ivan MICETIC; Rune Mollegaard FRIBORG; Sebastien MORETTI; Chris MORRIS; Steffen MOLLER; Aleksandra NENADIC; Hedi PETERSON; Giuseppe PROFITI; Peter RICE; Paolo ROMANO; Paola RONCAGLIA; Rabie SAIDI; Andrea SCHAFFERHANS; Veit SCHWAMMLE; Callum SMITH; Maria Maddalena SPEROTTO; Heinz STOCKINGER; Radka SVOBODOVÁ VAŘEKOVÁ; Silvio C. E. TOSATTO; Victor DE LA TORRE; Paolo UVA; Allegra VIA; Guy YACHDAV; Federico ZAMBELLI; Gert VRIEND; Burkhard ROST; Helen PARKINSON; Peter LONGREEN a Soren BRUNAK. Tools and data services registry: a community effort to document bioinformatics resources. Nucleic Acids Research. Oxford: Oxford University Press, 2016, roč. 44, D1, s. "D38"-"D47", 10 s. ISSN 0305-1048. Dostupné z: https://doi.org/10.1093/nar/gkv1116.
@article{1345757, author = {Ison, Jon and Rapacki, Kristoffer and Menager, Herve and Kalas, Matus and Rydza, Emil and Chmura, Piotr and Anthon, Christian and Beard, Niall and Berka, Karel and Bolser, Dan and Booth, Tim and Bretaudeau, Anthony and Brezovský, Jan and Casadio, Rita and Cesareni, Gianni and Coppens, Frederik and Cornell, Michael and Cuccuru, Gianmauro and Davidsen, Kristian and Della Vedova, Gianluca and Dogan, Tunca and DoppeltandAzeroual, Olivia and Emery, Laura and Gasteiger, Elisabeth and Gatter, Thomas and Goldberg, Tatyana and Grosjean, Marie and Gruning, Bjoern and HelmerandCitterich, Manuela and Ienasescu, Hans and Ioannidis, Vassilios and Jespersen, Martin Closter and Jimenez, Rafael and Juty, Nick and Juvan, Peter and Koch, Maximilian and Laibe, Camille and Li, JingandWoei and Licata, Luana and Mareuil, Fabien and Micetic, Ivan and Friborg, Rune Mollegaard and Moretti, Sebastien and Morris, Chris and Moller, Steffen and Nenadic, Aleksandra and Peterson, Hedi and Profiti, Giuseppe and Rice, Peter and Romano, Paolo and Roncaglia, Paola and Saidi, Rabie and Schafferhans, Andrea and Schwammle, Veit and Smith, Callum and Sperotto, Maria Maddalena and Stockinger, Heinz and Svobodová Vařeková, Radka and Tosatto, Silvio C. E. and de la Torre, Victor and Uva, Paolo and Via, Allegra and Yachdav, Guy and Zambelli, Federico and Vriend, Gert and Rost, Burkhard and Parkinson, Helen and Longreen, Peter and Brunak, Soren}, article_location = {Oxford}, article_number = {D1}, doi = {https://doi.org/10.1093/nar/gkv1116}, keywords = {MOLECULAR-BIOLOGY; SOFTWARE-DEVELOPMENT; LIFE SCIENCES; WEB SERVICES; COLLECTION; COMPILATION; SEQANSWERS; FRAMEWORK}, language = {eng}, issn = {0305-1048}, journal = {Nucleic Acids Research}, title = {Tools and data services registry: a community effort to document bioinformatics resources}, url = {https://academic.oup.com/nar/article-lookup/doi/10.1093/nar/gkv1116}, volume = {44}, year = {2016} }
TY - JOUR ID - 1345757 AU - Ison, Jon - Rapacki, Kristoffer - Menager, Herve - Kalas, Matus - Rydza, Emil - Chmura, Piotr - Anthon, Christian - Beard, Niall - Berka, Karel - Bolser, Dan - Booth, Tim - Bretaudeau, Anthony - Brezovský, Jan - Casadio, Rita - Cesareni, Gianni - Coppens, Frederik - Cornell, Michael - Cuccuru, Gianmauro - Davidsen, Kristian - Della Vedova, Gianluca - Dogan, Tunca - Doppelt-Azeroual, Olivia - Emery, Laura - Gasteiger, Elisabeth - Gatter, Thomas - Goldberg, Tatyana - Grosjean, Marie - Gruning, Bjoern - Helmer-Citterich, Manuela - Ienasescu, Hans - Ioannidis, Vassilios - Jespersen, Martin Closter - Jimenez, Rafael - Juty, Nick - Juvan, Peter - Koch, Maximilian - Laibe, Camille - Li, Jing-Woei - Licata, Luana - Mareuil, Fabien - Micetic, Ivan - Friborg, Rune Mollegaard - Moretti, Sebastien - Morris, Chris - Moller, Steffen - Nenadic, Aleksandra - Peterson, Hedi - Profiti, Giuseppe - Rice, Peter - Romano, Paolo - Roncaglia, Paola - Saidi, Rabie - Schafferhans, Andrea - Schwammle, Veit - Smith, Callum - Sperotto, Maria Maddalena - Stockinger, Heinz - Svobodová Vařeková, Radka - Tosatto, Silvio C. E. - de la Torre, Victor - Uva, Paolo - Via, Allegra - Yachdav, Guy - Zambelli, Federico - Vriend, Gert - Rost, Burkhard - Parkinson, Helen - Longreen, Peter - Brunak, Soren PY - 2016 TI - Tools and data services registry: a community effort to document bioinformatics resources JF - Nucleic Acids Research VL - 44 IS - D1 SP - "D38"-"D47" EP - "D38"-"D47" PB - Oxford University Press SN - 03051048 KW - MOLECULAR-BIOLOGY KW - SOFTWARE-DEVELOPMENT KW - LIFE SCIENCES KW - WEB SERVICES KW - COLLECTION KW - COMPILATION KW - SEQANSWERS KW - FRAMEWORK UR - https://academic.oup.com/nar/article-lookup/doi/10.1093/nar/gkv1116 L2 - https://academic.oup.com/nar/article-lookup/doi/10.1093/nar/gkv1116 N2 - Life sciences are yielding huge data sets that underpin scientific discoveries fundamental to improvement in human health, agriculture and the environment. In support of these discoveries, a plethora of databases and tools are deployed, in technically complex and diverse implementations, across a spectrum of scientific disciplines. The corpus of documentation of these resources is fragmented across the Web, with much redundancy, and has lacked a common standard of information. The outcome is that scientists must often struggle to find, understand, compare and use the best resources for the task at hand. Here we present a community-driven curation effort, supported by ELIXIR-the European infrastructure for biological information-that aspires to a comprehensive and consistent registry of information about bioinformatics resources. The sustainable upkeep of this Tools and Data Services Registry is assured by a curation effort driven by and tailored to local needs, and shared amongst a network of engaged partners. As of November 2015, the registry includes 1785 resources, with depositions from 126 individual registrations including 52 institutional providers and 74 individuals. With community support, the registry can become a standard for dissemination of information about bioinformatics resources: we welcome everyone to join us in this common endeavour. The registry is freely available at https://bio.tools. ER -
ISON, Jon; Kristoffer RAPACKI; Herve MENAGER; Matus KALAS; Emil RYDZA; Piotr CHMURA; Christian ANTHON; Niall BEARD; Karel BERKA; Dan BOLSER; Tim BOOTH; Anthony BRETAUDEAU; Jan BREZOVSKÝ; Rita CASADIO; Gianni CESARENI; Frederik COPPENS; Michael CORNELL; Gianmauro CUCCURU; Kristian DAVIDSEN; Gianluca DELLA VEDOVA; Tunca DOGAN; Olivia DOPPELT-AZEROUAL; Laura EMERY; Elisabeth GASTEIGER; Thomas GATTER; Tatyana GOLDBERG; Marie GROSJEAN; Bjoern GRUNING; Manuela HELMER-CITTERICH; Hans IENASESCU; Vassilios IOANNIDIS; Martin Closter JESPERSEN; Rafael JIMENEZ; Nick JUTY; Peter JUVAN; Maximilian KOCH; Camille LAIBE; Jing-Woei LI; Luana LICATA; Fabien MAREUIL; Ivan MICETIC; Rune Mollegaard FRIBORG; Sebastien MORETTI; Chris MORRIS; Steffen MOLLER; Aleksandra NENADIC; Hedi PETERSON; Giuseppe PROFITI; Peter RICE; Paolo ROMANO; Paola RONCAGLIA; Rabie SAIDI; Andrea SCHAFFERHANS; Veit SCHWAMMLE; Callum SMITH; Maria Maddalena SPEROTTO; Heinz STOCKINGER; Radka SVOBODOVÁ VAŘEKOVÁ; Silvio C. E. TOSATTO; Victor DE LA TORRE; Paolo UVA; Allegra VIA; Guy YACHDAV; Federico ZAMBELLI; Gert VRIEND; Burkhard ROST; Helen PARKINSON; Peter LONGREEN a Soren BRUNAK. Tools and data services registry: a community effort to document bioinformatics resources. \textit{Nucleic Acids Research}. Oxford: Oxford University Press, 2016, roč.~44, D1, s.~''D38''-''D47'', 10 s. ISSN~0305-1048. Dostupné z: https://doi.org/10.1093/nar/gkv1116.