Repeated Whole-Genome Duplication, Karyotype Reshuffling, and
Biased Retention of Stress-Responding Genes in Buckler Mustard

J 2016

Repeated Whole-Genome Duplication, Karyotype Reshuffling, and Biased Retention of Stress-Responding Genes in Buckler Mustard

GEISER, Celine, Terezie MANDÁKOVÁ, Nils ARRIGO, Martin LYSÁK, Christian PARISOD et. al.

Základní údaje

Originální název

Repeated Whole-Genome Duplication, Karyotype Reshuffling, and Biased Retention of Stress-Responding Genes in Buckler Mustard

Autoři

GEISER, Celine (756 Švýcarsko), Terezie MANDÁKOVÁ (203 Česká republika, domácí), Nils ARRIGO (756 Švýcarsko), Martin LYSÁK (203 Česká republika, garant, domácí) a Christian PARISOD (756 Švýcarsko)

Vydání

Plant Cell, ROCKVILLE, AMER SOC PLANT BIOLOGISTS, 2016, 1040-4651

Další údaje

Jazyk

angličtina

Typ výsledku

Článek v odborném periodiku

Obor

10600 1.6 Biological sciences

Stát vydavatele

Spojené státy

Utajení

není předmětem státního či obchodního tajemství

Odkazy

URL

Impakt faktor

Impact factor: 8.726

Kód RIV

RIV/00216224:14740/16:00088730

Organizační jednotka

Středoevropský technologický institut

DOI

http://dx.doi.org/10.1105/tpc.15.00791

UT WoS

000369814300006

Klíčová slova anglicky

BISCUTELLA-LAEVIGATA BRASSICACEAE; PHYLOGENETIC ANALYSIS; AGE DISTRIBUTIONS; FLOWERING PLANTS; EVOLUTION; CONSEQUENCES; POLYPLOIDS; ARABIDOPSIS; PALEOPOLYPLOIDY; DIPLOIDIZATION

Štítky

rivok

Změněno: 1. 3. 2017 14:18, Mgr. Eva Špillingová

Anotace

V originále

Whole-genome duplication (WGD) is usually followed by gene loss and karyotype repatterning. Despite evidence of new adaptive traits associated with WGD, the underpinnings and evolutionary significance of such genome fractionation remain elusive. Here, we use Buckler mustard (Biscutella laevigata) to infer processes that have driven the retention of duplicated genes after recurrent WGDs. In addition to the beta- and alpha-WGD events shared by all Brassicaceae, cytogenetic and transcriptome analyses revealed two younger WGD events that occurred at times of environmental changes in the clade of Buckler mustard (Biscutelleae): a mesopolyploidy event from the late Miocene that was followed by considerable karyotype reshuffling and chromosome number reduction and a neopolyploidy event during the Pleistocene. Although a considerable number of the older duplicates presented signatures of retention under positive selection, the majority of retained duplicates arising from the younger mesopolyploidy WGD event matched predictions of the gene balance hypothesis and showed evidence of strong purifying selection as well as enrichment in gene categories responding to abiotic stressors. Retention of large stretches of chromosomes for both genomic copies supported the hypothesis that cycles of WGD and biased fractionation shaped the genome of this stress-tolerant polypolyloid, promoting the adaptive recruitment of stress-responding genes in the face of environmental challenges.

Návaznosti

EE2.3.20.0189, projekt VaV

Název: Rozvoj výzkumné excelence v oblasti evoluční cytogenomiky, epigenetiky a buněčné signalizace

EE2.3.30.0037, projekt VaV

Název: Zaměstnáním nejlepších mladých vědců k rozvoji mezinárodní spolupráce

GA13-10159S, projekt VaV

Název: Role mesopolyploidie v evoluci čeledi Brassicaceae

Investor: Grantová agentura ČR, Role mesopolyploidie v evoluci celedi Brassicaceae

Citovat

GEISER, Celine, Terezie MANDÁKOVÁ, Nils ARRIGO, Martin LYSÁK a Christian PARISOD. Repeated Whole-Genome Duplication, Karyotype Reshuffling, and Biased Retention of Stress-Responding Genes in Buckler Mustard. Plant Cell. ROCKVILLE: AMER SOC PLANT BIOLOGISTS, 2016, roč. 28, č. 1, s. 17-27. ISSN 1040-4651. Dostupné z: https://dx.doi.org/10.1105/tpc.15.00791.

@article{1374280,
   author = {Geiser, Celine and Mandáková, Terezie and Arrigo, Nils and Lysák, Martin and Parisod, Christian},
   article_location = {ROCKVILLE},
   article_number = {1},
   doi = {http://dx.doi.org/10.1105/tpc.15.00791},
   keywords = {BISCUTELLA-LAEVIGATA BRASSICACEAE; PHYLOGENETIC ANALYSIS; AGE DISTRIBUTIONS; FLOWERING PLANTS; EVOLUTION; CONSEQUENCES; POLYPLOIDS; ARABIDOPSIS; PALEOPOLYPLOIDY; DIPLOIDIZATION},
   language = {eng},
   issn = {1040-4651},
   journal = {Plant Cell},
   title = {Repeated Whole-Genome Duplication, Karyotype Reshuffling, and Biased Retention of Stress-Responding Genes in Buckler Mustard},
   url = {http://www.plantcell.org/content/28/1/17},
   volume = {28},
   year = {2016}
}

TY  - JOUR
ID  - 1374280
AU  - Geiser, Celine - Mandáková, Terezie - Arrigo, Nils - Lysák, Martin - Parisod, Christian
PY  - 2016
TI  - Repeated Whole-Genome Duplication, Karyotype Reshuffling, and Biased Retention of Stress-Responding Genes in Buckler Mustard
JF  - Plant Cell
VL  - 28
IS  - 1
SP  - 17-27
EP  - 17-27
PB  - AMER SOC PLANT BIOLOGISTS
SN  - 10404651
KW  - BISCUTELLA-LAEVIGATA BRASSICACEAE
KW  - PHYLOGENETIC ANALYSIS
KW  - AGE DISTRIBUTIONS
KW  - FLOWERING PLANTS
KW  - EVOLUTION
KW  - CONSEQUENCES
KW  - POLYPLOIDS
KW  - ARABIDOPSIS
KW  - PALEOPOLYPLOIDY
KW  - DIPLOIDIZATION
UR  - http://www.plantcell.org/content/28/1/17
L2  - http://www.plantcell.org/content/28/1/17
N2  - Whole-genome duplication (WGD) is usually followed by gene loss and karyotype repatterning. Despite evidence of new adaptive traits associated with WGD, the underpinnings and evolutionary significance of such genome fractionation remain elusive. Here, we use Buckler mustard (Biscutella laevigata) to infer processes that have driven the retention of duplicated genes after recurrent WGDs. In addition to the beta- and alpha-WGD events shared by all Brassicaceae, cytogenetic and transcriptome analyses revealed two younger WGD events that occurred at times of environmental changes in the clade of Buckler mustard (Biscutelleae): a mesopolyploidy event from the late Miocene that was followed by considerable karyotype reshuffling and chromosome number reduction and a neopolyploidy event during the Pleistocene. Although a considerable number of the older duplicates presented signatures of retention under positive selection, the majority of retained duplicates arising from the younger mesopolyploidy WGD event matched predictions of the gene balance hypothesis and showed evidence of strong purifying selection as well as enrichment in gene categories responding to abiotic stressors. Retention of large stretches of chromosomes for both genomic copies supported the hypothesis that cycles of WGD and biased fractionation shaped the genome of this stress-tolerant polypolyloid, promoting the adaptive recruitment of stress-responding genes in the face of environmental challenges.
ER  -

GEISER, Celine, Terezie MANDÁKOVÁ, Nils ARRIGO, Martin LYSÁK a Christian PARISOD. Repeated Whole-Genome Duplication, Karyotype Reshuffling, and Biased Retention of Stress-Responding Genes in Buckler Mustard. \textit{Plant Cell}. ROCKVILLE: AMER SOC PLANT BIOLOGISTS, 2016, roč.~28, č.~1, s.~17-27. ISSN~1040-4651. Dostupné z: https://dx.doi.org/10.1105/tpc.15.00791.

Podrobný výpis o publikaci