COMPUTATIONAL MOLECULAR EVOLUTION FROM MATHEMATICAL MODELS TO
NOVEL DISTANCE METRICS BASED ON INTRA-GROUP ANALYSIS

D 2011

COMPUTATIONAL MOLECULAR EVOLUTION FROM MATHEMATICAL MODELS TO NOVEL DISTANCE METRICS BASED ON INTRA-GROUP ANALYSIS

VOGEL, Ivan; Pavel OČENÁŠEK a František ZEDEK

Základní údaje

Originální název

COMPUTATIONAL MOLECULAR EVOLUTION FROM MATHEMATICAL MODELS TO NOVEL DISTANCE METRICS BASED ON INTRA-GROUP ANALYSIS

Autoři

VOGEL, Ivan; Pavel OČENÁŠEK a František ZEDEK

Vydání

Brno, Electronic Devices and Systems IMAPS CS International Conference, od s. 264-269, 6 s. 2011

Nakladatel

BRNO UNIV TECHNOLOGY VUT PRESS

Další údaje

Jazyk

angličtina

Typ výsledku

Stať ve sborníku

Obor

10600 1.6 Biological sciences

Stát vydavatele

Česká republika

Utajení

není předmětem státního či obchodního tajemství

Forma vydání

elektronická verze "online"

Označené pro přenos do RIV

Ano

Kód RIV

RIV/00216224:14310/11:00107072

Organizační jednotka

Přírodovědecká fakulta

ISBN

978-80-214-4303-7

UT WoS

000393738900048

Klíčová slova anglicky

phylogeny; intra-group analysis; substitution model; Markov chains

Příznaky

Mezinárodní význam, Recenzováno

Změněno: 9. 5. 2017 09:29, Mgr. František Zedek, Ph.D.

Anotace

V originále

In the proposed paper we analyse and discuss the molecular evolution from the point of view of mathematical analysis and statistics. Some characteristics of distance-based algorithms for phylogenetic inference are depicted. We furthermore use knowledge of mathematical models to design a modified algorithm for phylogenetic tree reconstruction. We implement the presented methods in the form of a simple phylogenetic library, briefly report about results of our case study and finally show a way for building a web interface for biological purposes through Mobyle portal. Finally, we draw a conclusion and discuss possible future work on the project.

Citovat

VOGEL, Ivan; Pavel OČENÁŠEK a František ZEDEK. COMPUTATIONAL MOLECULAR EVOLUTION FROM MATHEMATICAL MODELS TO NOVEL DISTANCE METRICS BASED ON INTRA-GROUP ANALYSIS. Online. In Hegr, O. Electronic Devices and Systems IMAPS CS International Conference. Brno: BRNO UNIV TECHNOLOGY VUT PRESS, 2011, s. 264-269. ISBN 978-80-214-4303-7.

@inproceedings{1379777,
   author = {Vogel, Ivan and Očenášek, Pavel and Zedek, František},
   address = {Brno},
   booktitle = {Electronic Devices and Systems IMAPS CS International Conference},
   editor = {Hegr, O.},
   keywords = {phylogeny; intra-group analysis; substitution model; Markov chains},
   howpublished = {elektronická verze "online"},
   language = {eng},
   location = {Brno},
   isbn = {978-80-214-4303-7},
   pages = {264-269},
   publisher = {BRNO UNIV TECHNOLOGY VUT PRESS},
   title = {COMPUTATIONAL MOLECULAR EVOLUTION FROM MATHEMATICAL MODELS TO NOVEL DISTANCE METRICS BASED ON INTRA-GROUP ANALYSIS},
   year = {2011}
}

TY  - CONF
ID  - 1379777
AU  - Vogel, Ivan - Očenášek, Pavel - Zedek, František
PY  - 2011
TI  - COMPUTATIONAL MOLECULAR EVOLUTION FROM MATHEMATICAL MODELS TO NOVEL DISTANCE METRICS BASED ON INTRA-GROUP ANALYSIS
PB  - BRNO UNIV TECHNOLOGY VUT PRESS
CY  - Brno
SN  - 9788021443037
KW  - phylogeny
KW  - intra-group analysis
KW  - substitution model
KW  - Markov chains
N2  - In the proposed paper we analyse and discuss the molecular evolution from the point of view of mathematical analysis and statistics. Some characteristics of distance-based algorithms for phylogenetic inference are depicted. We furthermore use knowledge of mathematical models to design a modified algorithm for phylogenetic tree reconstruction. We implement the presented methods in the form of a simple phylogenetic library, briefly report about results of our case study and finally show a way for building a web interface for biological purposes through Mobyle portal. Finally, we draw a conclusion and discuss possible future work on the project.
ER  -

VOGEL, Ivan; Pavel OČENÁŠEK a František ZEDEK. COMPUTATIONAL MOLECULAR EVOLUTION FROM MATHEMATICAL MODELS TO NOVEL DISTANCE METRICS BASED ON INTRA-GROUP ANALYSIS. Online. In Hegr, O. \textit{Electronic Devices and Systems IMAPS CS International Conference}. Brno: BRNO UNIV TECHNOLOGY VUT PRESS, 2011, s.~264-269. ISBN~978-80-214-4303-7.

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