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@inbook{1394439, author = {Brezovský, Jan and Kozlíková, Barbora and Damborský, Jiří}, address = {New York, NY}, booktitle = {Protein Engineering. Methods in Molecular Biology}, doi = {http://dx.doi.org/10.1007/978-1-4939-7366-8_3}, editor = {Bornscheuer U., Höhne M.}, keywords = {Binding;Protein;Tunnel;Channel;Gate;Rational design;Software;CAVER;Transport}, howpublished = {tištěná verze "print"}, language = {eng}, location = {New York, NY}, isbn = {978-1-4939-7364-4}, pages = {25-42}, publisher = {Humana Press}, title = {Computational Analysis of Protein Tunnels and Channels}, year = {2018} }
TY - CHAP ID - 1394439 AU - Brezovský, Jan - Kozlíková, Barbora - Damborský, Jiří PY - 2018 TI - Computational Analysis of Protein Tunnels and Channels VL - 1685 PB - Humana Press CY - New York, NY SN - 9781493973644 KW - Binding;Protein;Tunnel;Channel;Gate;Rational design;Software;CAVER;Transport N2 - Protein tunnels connecting the functional buried cavities with bulk solvent and protein channels, enabling the transport through biological membranes, represent the structural features that govern the exchange rates of ligands, ions, and water solvent. Tunnels and channels are present in a vast number of known proteins and provide control over their function. Modification of these structural features by protein engineering frequently provides proteins with improved properties. Here we present a detailed computational protocol employing the CAVER software that is applicable for: (1) the analysis of tunnels and channels in protein structures, and (2) the selection of hot-spot residues in tunnels or channels that can be mutagenized for improved activity, specificity, enantioselectivity, or stability. ER -
BREZOVSKÝ, Jan, Barbora KOZLÍKOVÁ a Jiří DAMBORSKÝ. Computational Analysis of Protein Tunnels and Channels. In Bornscheuer U., Höhne M. \textit{Protein Engineering. Methods in Molecular Biology}. New York, NY: Humana Press, 2018, s.~25-42. 1685. ISBN~978-1-4939-7364-4. Dostupné z: https://dx.doi.org/10.1007/978-1-4939-7366-8\_{}3.
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