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@proceedings{1396435,
author = {Troják, Matej and Šafránek, David and Klement, Matej and Děd, Tadeáš and Červený, Jan and Brim, Luboš},
booktitle = {Doctoral Workshop on Mathematical and Engineering Methods in Computer Science},
keywords = {formal specification; biological systems; systems biology; rule-based language},
language = {eng},
title = {Biochemical Space: A Language for Formal Description and Annotation of Complex Biological Processes},
url = {http://www.memics.cz/2015/},
year = {2015}
}
TY - CONF
ID - 1396435
AU - Troják, Matej - Šafránek, David - Klement, Matej - Děd, Tadeáš - Červený, Jan - Brim, Luboš
PY - 2015
TI - Biochemical Space: A Language for Formal Description and Annotation of Complex Biological Processes
KW - formal specification
KW - biological systems
KW - systems biology
KW - rule-based language
UR - http://www.memics.cz/2015/
N2 - Biochemical Space (BCS) is a novel framework for practical description of complex biological processes. It is developed as a part of Comprehensive Modelling Platform (CMP) – a web-based platform for modelling and analysis of biological processes. In the context of CMP, Biochemical Space glues together complicated quantitative models with an easy-to- understand, yet formal and compact qualitative description. BCS allows to specify formal and well-annotated reaction networks of chemical entities and elemental reactions onto which the mathematical models are projected. BCS is supported by a Biochemical Space Language (BCSL) that combines state-of-the-art rule-based techniques with meta-data formats devel- oped in well-known annotation databases.
ER -
TROJÁK, Matej, David ŠAFRÁNEK, Matej KLEMENT, Tadeáš DĚD, Jan ČERVENÝ a Luboš BRIM. Biochemical Space: A Language for Formal Description and Annotation of Complex Biological Processes. In \textit{Doctoral Workshop on Mathematical and Engineering Methods in Computer Science}. 2015.
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