Particle Tracking Accuracy Measurement Based on Comparison of
Linear Oriented Forests

D 2017

Particle Tracking Accuracy Measurement Based on Comparison of Linear Oriented Forests

MAŠKA, Martin a Pavel MATULA

Základní údaje

Originální název

Particle Tracking Accuracy Measurement Based on Comparison of Linear Oriented Forests

Autoři

MAŠKA, Martin (203 Česká republika, garant, domácí) a Pavel MATULA (203 Česká republika, domácí)

Vydání

Venice, 16th IEEE International Conference on Computer Vision Workshops, od s. 11-17, 7 s. 2017

Nakladatel

IEEE

Další údaje

Jazyk

angličtina

Typ výsledku

Stať ve sborníku

Obor

10201 Computer sciences, information science, bioinformatics

Stát vydavatele

Spojené státy

Utajení

není předmětem státního či obchodního tajemství

Forma vydání

elektronická verze "online"

Odkazy

URL

Kód RIV

RIV/00216224:14330/17:00095219

Organizační jednotka

Fakulta informatiky

ISBN

978-1-5386-1034-3

ISSN

DOI

http://dx.doi.org/10.1109/ICCVW.2017.8

UT WoS

000425239600002

Klíčová slova anglicky

particle tracking;linear oriented forest;performance evaluation

Štítky

cbia-web

Příznaky

Mezinárodní význam, Recenzováno

Změněno: 9. 2. 2022 09:16, doc. RNDr. Pavel Matula, Ph.D.

Anotace

V originále

Particle tracking is of fundamental importance in diverse quantitative analyses of dynamic intracellular processes using time-lapse microscopy. Due to frequent impracticability of tracking particles manually, a number of fully automated algorithms have been developed over past decades, carrying out the tracking task in two subsequent phases: (1) particle detection and (2) particle linking. An objective benchmark for assessing the performance of such algorithms was recently established by the Particle Tracking Challenge. Because its performance evaluation protocol finds correspondences between a reference and algorithm-generated tracking result at the level of individual tracks, the performance assessment strongly depends on the algorithm linking capabilities. In this paper, we propose a novel performance evaluation protocol based on a simplified version of the tracking accuracy measure employed in the Cell Tracking Challenge, which establishes the correspondences at the level of individual particle detections, thus allowing one to evaluate the performance of each of the two phases in an isolated, unbiased manner. By analyzing the tracking results of all 14 algorithms competing in the Particle Tracking Challenge using the proposed evaluation protocol, we reveal substantial changes in their detection and linking performance, yielding rankings different from those reported previously.

Návaznosti

GJ16-03909Y, projekt VaV

Název: Vývoj spolehlivých metod pro automatizovanou kvantitativní charakterizaci buněčné motility ve fluorescenční mikroskopii

Investor: Grantová agentura ČR, Vývoj spolehlivých metod pro automatizovanou kvantitativní charakterizaci buněčné motility ve fluorescenční mikroskopii

Citovat

MAŠKA, Martin a Pavel MATULA. Particle Tracking Accuracy Measurement Based on Comparison of Linear Oriented Forests. Online. In 16th IEEE International Conference on Computer Vision Workshops. Venice: IEEE, 2017, s. 11-17. ISBN 978-1-5386-1034-3. Dostupné z: https://dx.doi.org/10.1109/ICCVW.2017.8.

@inproceedings{1397242,
   author = {Maška, Martin and Matula, Pavel},
   address = {Venice},
   booktitle = {16th IEEE International Conference on Computer Vision Workshops},
   doi = {http://dx.doi.org/10.1109/ICCVW.2017.8},
   keywords = {particle tracking;linear oriented forest;performance evaluation},
   howpublished = {elektronická verze "online"},
   language = {eng},
   location = {Venice},
   isbn = {978-1-5386-1034-3},
   pages = {11-17},
   publisher = {IEEE},
   title = {Particle Tracking Accuracy Measurement Based on Comparison of Linear Oriented Forests},
   url = {http://dx.doi.org/10.1109/ICCVW.2017.8},
   year = {2017}
}

TY  - JOUR
ID  - 1397242
AU  - Maška, Martin - Matula, Pavel
PY  - 2017
TI  - Particle Tracking Accuracy Measurement Based on Comparison of Linear Oriented Forests
PB  - IEEE
CY  - Venice
SN  - 9781538610343
KW  - particle tracking;linear oriented forest;performance evaluation
UR  - http://dx.doi.org/10.1109/ICCVW.2017.8
N2  - Particle tracking is of fundamental importance in diverse quantitative analyses of dynamic intracellular processes using time-lapse microscopy. Due to frequent impracticability of tracking particles manually, a number of fully automated algorithms have been developed over past decades, carrying out the tracking task in two subsequent phases: (1) particle detection and (2) particle linking. An objective benchmark for assessing the performance of such algorithms was recently established by the Particle Tracking Challenge. Because its performance evaluation protocol finds correspondences between a reference and algorithm-generated tracking result at the level of individual tracks, the performance assessment strongly depends on the algorithm linking capabilities. In this paper, we propose a novel performance evaluation protocol based on a simplified version of the tracking accuracy measure employed in the Cell Tracking Challenge, which establishes the correspondences at the level of individual particle detections, thus allowing one to evaluate the performance of each of the two phases in an isolated, unbiased manner. By analyzing the tracking results of all 14 algorithms competing in the Particle Tracking Challenge using the proposed evaluation protocol, we reveal substantial changes in their detection and linking performance, yielding rankings different from those reported previously.
ER  -

MAŠKA, Martin a Pavel MATULA. Particle Tracking Accuracy Measurement Based on Comparison of Linear Oriented Forests. Online. In \textit{16th IEEE International Conference on Computer Vision Workshops}. Venice: IEEE, 2017, s.~11-17. ISBN~978-1-5386-1034-3. Dostupné z: https://dx.doi.org/10.1109/ICCVW.2017.8.

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