SugarSketcher: Quick and Intuitive Online Glycan Drawing

J 2018

SugarSketcher: Quick and Intuitive Online Glycan Drawing

ALOCCI, Davide, Pavla SUCHÁNKOVÁ, Renaud COSTA, Nicolas HORY, Julien MARIETHOZ et. al.

Základní údaje

Originální název

SugarSketcher: Quick and Intuitive Online Glycan Drawing

Autoři

ALOCCI, Davide (380 Itálie), Pavla SUCHÁNKOVÁ (203 Česká republika, domácí), Renaud COSTA (203 Česká republika), Nicolas HORY (250 Francie), Julien MARIETHOZ (276 Německo), Radka SVOBODOVÁ VAŘEKOVÁ (203 Česká republika, garant, domácí), Philip TOUKACH (756 Švýcarsko) a Frederique LISACEK (756 Švýcarsko)

Vydání

Molecules, Mayer und Muller, 2018, 1420-3049

Další údaje

Jazyk

angličtina

Typ výsledku

Článek v odborném periodiku

Obor

10608 Biochemistry and molecular biology

Stát vydavatele

Švýcarsko

Utajení

není předmětem státního či obchodního tajemství

Impakt faktor

Impact factor: 3.060

Kód RIV

RIV/00216224:14740/18:00105326

Organizační jednotka

Středoevropský technologický institut

DOI

http://dx.doi.org/10.3390/molecules23123206

UT WoS

000454523000156

Klíčová slova anglicky

carbohydrate; 2D structure; software; SNFG notation

Štítky

rivok

Příznaky

Mezinárodní význam, Recenzováno

Změněno: 25. 4. 2019 11:58, Mgr. Martin Prokop, Ph.D.

Anotace

V originále

SugarSketcher is an intuitive and fast JavaScript interface module for online drawing of glycan structures in the popular Symbol Nomenclature for Glycans (SNFG) notation and exporting them to various commonly used formats encoding carbohydrate sequences (e.g., GlycoCT) or quality images (e.g., svg). It does not require a backend server or any specific browser plugins and can be integrated in any web glycoinformatics project. SugarSketcher allows drawing glycans both for glycobiologists and non-expert users. The quick mode allows a newcomer to build up a glycan structure having only a limited knowledge in carbohydrate chemistry. The normal mode integrates advanced options which enable glycobiologists to tailor complex carbohydrate structures. The source code is freely available on GitHub and glycoinformaticians are encouraged to participate in the development process while users are invited to test a prototype available on the ExPASY web-site and send feedback.

Citovat

ALOCCI, Davide, Pavla SUCHÁNKOVÁ, Renaud COSTA, Nicolas HORY, Julien MARIETHOZ, Radka SVOBODOVÁ VAŘEKOVÁ, Philip TOUKACH a Frederique LISACEK. SugarSketcher: Quick and Intuitive Online Glycan Drawing. Molecules. Mayer und Muller, 2018, roč. 23, č. 12, s. 3206-3216. ISSN 1420-3049. Dostupné z: https://dx.doi.org/10.3390/molecules23123206.

@article{1484322,
   author = {Alocci, Davide and Suchánková, Pavla and Costa, Renaud and Hory, Nicolas and Mariethoz, Julien and Svobodová Vařeková, Radka and Toukach, Philip and Lisacek, Frederique},
   article_number = {12},
   doi = {http://dx.doi.org/10.3390/molecules23123206},
   keywords = {carbohydrate; 2D structure; software; SNFG notation},
   language = {eng},
   issn = {1420-3049},
   journal = {Molecules},
   title = {SugarSketcher: Quick and Intuitive Online Glycan Drawing},
   volume = {23},
   year = {2018}
}

TY  - JOUR
ID  - 1484322
AU  - Alocci, Davide - Suchánková, Pavla - Costa, Renaud - Hory, Nicolas - Mariethoz, Julien - Svobodová Vařeková, Radka - Toukach, Philip - Lisacek, Frederique
PY  - 2018
TI  - SugarSketcher: Quick and Intuitive Online Glycan Drawing
JF  - Molecules
VL  - 23
IS  - 12
SP  - 3206
EP  - 3206
PB  - Mayer und Muller
SN  - 14203049
KW  - carbohydrate
KW  - 2D structure
KW  - software
KW  - SNFG notation
N2  - SugarSketcher is an intuitive and fast JavaScript interface module for online drawing of glycan structures in the popular Symbol Nomenclature for Glycans (SNFG) notation and exporting them to various commonly used formats encoding carbohydrate sequences (e.g., GlycoCT) or quality images (e.g., svg). It does not require a backend server or any specific browser plugins and can be integrated in any web glycoinformatics project. SugarSketcher allows drawing glycans both for glycobiologists and non-expert users. The quick mode allows a newcomer to build up a glycan structure having only a limited knowledge in carbohydrate chemistry. The normal mode integrates advanced options which enable glycobiologists to tailor complex carbohydrate structures. The source code is freely available on GitHub and glycoinformaticians are encouraged to participate in the development process while users are invited to test a prototype available on the ExPASY web-site and send feedback.
ER  -

ALOCCI, Davide, Pavla SUCHÁNKOVÁ, Renaud COSTA, Nicolas HORY, Julien MARIETHOZ, Radka SVOBODOVÁ VAŘEKOVÁ, Philip TOUKACH a Frederique LISACEK. SugarSketcher: Quick and Intuitive Online Glycan Drawing. \textit{Molecules}. Mayer und Muller, 2018, roč.~23, č.~12, s.~3206-3216. ISSN~1420-3049. Dostupné z: https://dx.doi.org/10.3390/molecules23123206.

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