Genetic diversity and demographic history of the Siberian lime
(Tilia sibirica)

J 2018

Genetic diversity and demographic history of the Siberian lime (Tilia sibirica)

LOGAN, Samuel A.; Milan CHYTRÝ a Kirsten WOLFF

Základní údaje

Originální název

Genetic diversity and demographic history of the Siberian lime (Tilia sibirica)

Autoři

LOGAN, Samuel A.; Milan CHYTRÝ a Kirsten WOLFF

Vydání

Perspectives in Plant Ecology, Evolution and Systematics, 2018, 1433-8319

Další údaje

Jazyk

angličtina

Typ výsledku

Článek v odborném periodiku

Obor

10611 Plant sciences, botany

Stát vydavatele

Švýcarsko

Utajení

není předmětem státního či obchodního tajemství

Odkazy

https://dx.doi.org/10.1016/j.ppees.2018.04.005

Impakt faktor

Impact factor: 2.524

Označené pro přenos do RIV

Ano

Kód RIV

RIV/00216224:14310/18:00101640

Organizační jednotka

Přírodovědecká fakulta

Klíčová slova anglicky

Approximate Bayesian Computation; Clonality; Genetic diversity; Microsatellites; Refugium; Siberia; Tilia cordata; Tree genetics

Příznaky

Mezinárodní význam, Recenzováno

Změněno: 23. 4. 2024 14:10, Mgr. Michal Petr

Anotace

V originále

Tilia sibirica Bayer (Siberian lime) is endemic to the low mountain systems north of the Altai Mountains of southern Siberia, approximately 1,000 kms to the east of the natural range limit of its closest congeneric, the small-leaved lime (Tilia cordata). Some consider the taxon to be a subspecies of T. cordata. This putative pre-Last Glacial Maximum (LGM) relict may have had a stronghold in a refugium of the Altai Mountains and survived various waves of fluctuating climatic changes that occurred in the region. With continued climatic changes expected, these hardy but isolated populations can be important sources for population expansion. To date, we do not know the genetic status or history of this forest tree. This study uses standard population genetic and Approximate Bayesian Computation (ABC) analyses of microsatellite data to determine the genetic diversity and differentiation, clonal occurrence and date of divergence of the two lime taxa. The results show that T. sibirica and T. cordata are distinct biological units with significant genetic differentiation. The ABC analysis suggests a (Middle) Pleistocene divergence. We have revealed low within-population genetic diversity as well as high levels of clonality in T. sibirica. The focus now should be on restoring and conserving these small and isolated relict populations.

Návaznosti

GAP504/11/0454, projekt VaV

Název: Změny biodiverzity na přechodu pleistocénu a holocénu: současné analogie v reliktních ekosystémech Sibiře

Investor: Grantová agentura ČR, Změny biodiverzity na přechodu pleistocénu a holocénu: současné analogie v reliktních ekosystémech Sibiře

Citovat

LOGAN, Samuel A.; Milan CHYTRÝ a Kirsten WOLFF. Genetic diversity and demographic history of the Siberian lime (Tilia sibirica). Perspectives in Plant Ecology, Evolution and Systematics. 2018, roč. 33, August, s. 9-17. ISSN 1433-8319. Dostupné z: https://doi.org/10.1016/j.ppees.2018.04.005.

@article{1489857,
   author = {Logan, Samuel A. and Chytrý, Milan and Wolff, Kirsten},
   article_number = {August},
   doi = {https://doi.org/10.1016/j.ppees.2018.04.005},
   keywords = {Approximate Bayesian Computation; Clonality; Genetic diversity; Microsatellites; Refugium; Siberia; Tilia cordata; Tree genetics},
   language = {eng},
   issn = {1433-8319},
   journal = {Perspectives in Plant Ecology, Evolution and Systematics},
   title = {Genetic diversity and demographic history of the Siberian lime (Tilia sibirica)},
   url = {https://dx.doi.org/10.1016/j.ppees.2018.04.005},
   volume = {33},
   year = {2018}
}

TY  - JOUR
ID  - 1489857
AU  - Logan, Samuel A. - Chytrý, Milan - Wolff, Kirsten
PY  - 2018
TI  - Genetic diversity and demographic history of the Siberian lime (Tilia sibirica)
JF  - Perspectives in Plant Ecology, Evolution and Systematics
VL  - 33
IS  - August
SP  - 9-17
EP  - 9-17
SN  - 14338319
KW  - Approximate Bayesian Computation
KW  - Clonality
KW  - Genetic diversity
KW  - Microsatellites
KW  - Refugium
KW  - Siberia
KW  - Tilia cordata
KW  - Tree genetics
UR  - https://dx.doi.org/10.1016/j.ppees.2018.04.005
N2  - Tilia sibirica Bayer (Siberian lime) is endemic to the low mountain systems north of the Altai Mountains of southern Siberia, approximately 1,000 kms to the east of the natural range limit of its closest congeneric, the small-leaved lime (Tilia cordata). Some consider the taxon to be a subspecies of T. cordata. This putative pre-Last Glacial Maximum (LGM) relict may have had a stronghold in a refugium of the Altai Mountains and survived various waves of fluctuating climatic changes that occurred in the region. With continued climatic changes expected, these hardy but isolated populations can be important sources for population expansion. To date, we do not know the genetic status or history of this forest tree. This study uses standard population genetic and Approximate Bayesian Computation (ABC) analyses of microsatellite data to determine the genetic diversity and differentiation, clonal occurrence and date of divergence of the two lime taxa. The results show that T. sibirica and T. cordata are distinct biological units with significant genetic differentiation. The ABC analysis suggests a (Middle) Pleistocene divergence. We have revealed low within-population genetic diversity as well as high levels of clonality in T. sibirica. The focus now should be on restoring and conserving these small and isolated relict populations.
ER  -

LOGAN, Samuel A.; Milan CHYTRÝ a Kirsten WOLFF. Genetic diversity and demographic history of the Siberian lime (Tilia sibirica). \textit{Perspectives in Plant Ecology, Evolution and Systematics}. 2018, roč.~33, August, s.~9-17. ISSN~1433-8319. Dostupné z: https://doi.org/10.1016/j.ppees.2018.04.005.

Přehled o publikaci