Robustness of Representative Signals Relative to Data Loss
Using Atlas-Based Parcellations

J 2018

Robustness of Representative Signals Relative to Data Loss Using Atlas-Based Parcellations

GAJDOŠ, Martin; Eva VÝTVAROVÁ; Jan FOUSEK; Martin LAMOŠ; Michal MIKL et al.

Základní údaje

Originální název

Robustness of Representative Signals Relative to Data Loss Using Atlas-Based Parcellations

Autoři

GAJDOŠ, Martin ; Eva VÝTVAROVÁ ; Jan FOUSEK ; Martin LAMOŠ a Michal MIKL

Vydání

BRAIN TOPOGRAPHY, DORDRECHT, SPRINGER, 2018, 0896-0267

Další údaje

Jazyk

angličtina

Typ výsledku

Článek v odborném periodiku

Obor

30103 Neurosciences

Stát vydavatele

Nizozemské království

Utajení

není předmětem státního či obchodního tajemství

Impakt faktor

Impact factor: 3.104

Označené pro přenos do RIV

Ano

Kód RIV

RIV/00216224:14740/18:00101793

Organizační jednotka

Středoevropský technologický institut

Klíčová slova anglicky

Parcellation; fMRI; Atlas; Representative signal; Coverage

Štítky

CF MAFIL, rivok

Příznaky

Mezinárodní význam, Recenzováno

Změněno: 19. 3. 2019 15:54, Mgr. Pavla Foltynová, Ph.D.

Anotace

V originále

Parcellation-based approaches are an important part of functional magnetic resonance imaging data analysis. They are a necessary processing step for sorting data in structurally or functionally homogenous regions. Real functional magnetic resonance imaging datasets usually do not cover the atlas template completely; they are often spatially constrained due to the physical limitations of MR sequence settings, the inter-individual variability in brain shape, etc. When using a parcellation template, many regions are not completely covered by actual data. This paper addresses the issue of the area coverage required in real data in order to reliably estimate the representative signal and the influence of this kind of data loss on network analysis metrics. We demonstrate this issue on four datasets using four different widely used parcellation templates. We used two erosion approaches to simulate data loss on the whole-brain level and the ROI-specific level. Our results show that changes in ROI coverage have a systematic influence on network measures. Based on the results of our analysis, we recommend controlling the ROI coverage and retaining at least 60% of the area in order to ensure at least 80% of explained variance of the original signal.

Návaznosti

GA14-33143S, projekt VaV

Název: Vliv fyziologických procesů na reliabilitu a časovou proměnlivost konektivity v lidském mozku měřené pomocí fMRI

Investor: Grantová agentura ČR, Vliv fyziologických procesů na reliabilitu a časovou proměnlivost konektivity v lidském mozku měřené pomocí fMRI

LM2015062, projekt VaV

Název: Národní infrastruktura pro biologické a medicínské zobrazování

Investor: Ministerstvo školství, mládeže a tělovýchovy ČR, National research infrastructure for biological and medical imaging

LQ1601, projekt VaV

Název: CEITEC 2020 (Akronym: CEITEC2020)

Investor: Ministerstvo školství, mládeže a tělovýchovy ČR, CEITEC 2020

Citovat

GAJDOŠ, Martin; Eva VÝTVAROVÁ; Jan FOUSEK; Martin LAMOŠ a Michal MIKL. Robustness of Representative Signals Relative to Data Loss Using Atlas-Based Parcellations. BRAIN TOPOGRAPHY. DORDRECHT: SPRINGER, 2018, roč. 31, č. 5, s. 767-779. ISSN 0896-0267. Dostupné z: https://doi.org/10.1007/s10548-018-0647-6.

@article{1507857,
   author = {Gajdoš, Martin and Výtvarová, Eva and Fousek, Jan and Lamoš, Martin and Mikl, Michal},
   article_location = {DORDRECHT},
   article_number = {5},
   doi = {https://doi.org/10.1007/s10548-018-0647-6},
   keywords = {Parcellation; fMRI; Atlas; Representative signal; Coverage},
   language = {eng},
   issn = {0896-0267},
   journal = {BRAIN TOPOGRAPHY},
   title = {Robustness of Representative Signals Relative to Data Loss Using Atlas-Based Parcellations},
   volume = {31},
   year = {2018}
}

TY  - JOUR
ID  - 1507857
AU  - Gajdoš, Martin - Výtvarová, Eva - Fousek, Jan - Lamoš, Martin - Mikl, Michal
PY  - 2018
TI  - Robustness of Representative Signals Relative to Data Loss Using Atlas-Based Parcellations
JF  - BRAIN TOPOGRAPHY
VL  - 31
IS  - 5
SP  - 767-779
EP  - 767-779
PB  - SPRINGER
SN  - 08960267
KW  - Parcellation
KW  - fMRI
KW  - Atlas
KW  - Representative signal
KW  - Coverage
N2  - Parcellation-based approaches are an important part of functional magnetic resonance imaging data analysis. They are a necessary processing step for sorting data in structurally or functionally homogenous regions. Real functional magnetic resonance imaging datasets usually do not cover the atlas template completely; they are often spatially constrained due to the physical limitations of MR sequence settings, the inter-individual variability in brain shape, etc. When using a parcellation template, many regions are not completely covered by actual data. This paper addresses the issue of the area coverage required in real data in order to reliably estimate the representative signal and the influence of this kind of data loss on network analysis metrics. We demonstrate this issue on four datasets using four different widely used parcellation templates. We used two erosion approaches to simulate data loss on the whole-brain level and the ROI-specific level. Our results show that changes in ROI coverage have a systematic influence on network measures. Based on the results of our analysis, we recommend controlling the ROI coverage and retaining at least 60% of the area in order to ensure at least 80% of explained variance of the original signal.
ER  -

GAJDOŠ, Martin; Eva VÝTVAROVÁ; Jan FOUSEK; Martin LAMOŠ a Michal MIKL. Robustness of Representative Signals Relative to Data Loss Using Atlas-Based Parcellations. \textit{BRAIN TOPOGRAPHY}. DORDRECHT: SPRINGER, 2018, roč.~31, č.~5, s.~767-779. ISSN~0896-0267. Dostupné z: https://doi.org/10.1007/s10548-018-0647-6.

Přehled o publikaci