SEDLÁČEK, Vojtěch and Igor KUČERA. Functional and mechanistic characterization of an atypical flavin reductase encoded by the pden_5119 gene in Paracoccus denitrificans. Molecular Microbiology. HOBOKEN: WILEY, 2019, vol. 112, No 1, p. 166-183. ISSN 0950-382X. Available from: https://dx.doi.org/10.1111/mmi.14260.
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Basic information
Original name Functional and mechanistic characterization of an atypical flavin reductase encoded by the pden_5119 gene in Paracoccus denitrificans
Authors SEDLÁČEK, Vojtěch (203 Czech Republic, belonging to the institution) and Igor KUČERA (203 Czech Republic, guarantor, belonging to the institution).
Edition Molecular Microbiology, HOBOKEN, WILEY, 2019, 0950-382X.
Other information
Original language English
Type of outcome Article in a journal
Field of Study 10600 1.6 Biological sciences
Country of publisher United States of America
Confidentiality degree is not subject to a state or trade secret
WWW URL
Impact factor Impact factor: 3.418
RIV identification code RIV/00216224:14310/19:00107524
Organization unit Faculty of Science
Doi http://dx.doi.org/10.1111/mmi.14260
UT WoS 000474705900011
Keywords in English KINETIC MECHANISM; REDUCED FLAVIN; OXIDATIVE STRESS; SUPEROXIDE ANION; NADH OXIDASE
Tags rivok
Tags International impact, Reviewed
Changed by Changed by: Mgr. Marie Šípková, DiS., učo 437722. Changed: 17/4/2020 17:03.
Abstract
Pden_5119, annotated as an NADPH-dependent FMN reductase, shows homology to proteins assisting in utilization of alkanesulfonates in other bacteria. Here, we report that inactivation of the pden_5119 gene increased susceptibility to oxidative stress, decreased growth rate and increased growth yield; growth on lower alkanesulfonates as sulfur sources was not specifically influenced. Pden_5119 transcript rose in response to oxidative stressors, respiratory chain inhibitors and terminal oxidase downregulation. Kinetic analysis of a fusion protein suggested a sequential mechanism in which FMN binds first, followed by NADH. The affinity of flavin toward the protein decreased only slightly upon reduction. The observed strong viscosity dependence of k(cat) demonstrated that reduced FMN formed tends to remain bound to the enzyme where it can be re-oxidized by oxygen or, less efficiently, by various artificial electron acceptors. Stopped flow data were consistent with the enzyme-FMN complex being a functional oxidase that conducts the reduction of oxygen by NADH. Hydrogen peroxide was identified as the main product. As shown by isotope effects, hydride transfer occurs from the pro-S C4 position of the nicotinamide ring and partially limits the overall turnover rate. Collectively, our results point to a role for the Pden_5119 protein in maintaining the cellular redox state.
Links
GA16-18476S, research and development projectName: Oxidační stres u denitrifikačních baktérií: objasnění funkce zúčastněných proteinů a možných dopadů na životní prostředí
Investor: Czech Science Foundation
LM2011020, research and development projectName: CEITEC ? open access
Investor: Ministry of Education, Youth and Sports of the CR
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