HyperLabels: Browsing of Dense and Hierarchical Molecular 3D
Models

J 2021

HyperLabels: Browsing of Dense and Hierarchical Molecular 3D Models

KOUŘIL, David; Tobias ISENBERG; Barbora KOZLÍKOVÁ; Miriah MEYER; Eduard GROELLER et al.

Základní údaje

Originální název

HyperLabels: Browsing of Dense and Hierarchical Molecular 3D Models

Autoři

KOUŘIL, David; Tobias ISENBERG; Barbora KOZLÍKOVÁ ; Miriah MEYER; Eduard GROELLER a Ivan VIOLA

Vydání

IEEE Transactions on Visualization and Computer Graphics, 2021, 1077-2626

Další údaje

Jazyk

angličtina

Typ výsledku

Článek v odborném periodiku

Obor

10200 1.2 Computer and information sciences

Stát vydavatele

Spojené státy

Utajení

není předmětem státního či obchodního tajemství

Odkazy

URL

Impakt faktor

Impact factor: 5.226

Označené pro přenos do RIV

Ano

Kód RIV

RIV/00216224:14330/21:00118725

Organizační jednotka

Fakulta informatiky

Klíčová slova anglicky

Scientific visualization;navigation;3D molecular data;multi-scale data;hierarchical data;HyperLabels

Příznaky

Mezinárodní význam, Recenzováno

Změněno: 13. 7. 2021 10:07, doc. RNDr. Barbora Kozlíková, Ph.D.

Anotace

V originále

We present a method for the browsing of hierarchical 3D models in which we combine the typical navigation of hierarchical structures in a 2D environment---using clicks on nodes, links, or icons---with a 3D spatial data visualization. Our approach is motivated by large molecular models, for which the traditional single-scale navigational metaphors are not suitable. Multi-scale phenomena, e.g., in astronomy or geography, are complex to navigate due to their large data spaces and multi-level organization. Models from structural biology are in addition also densely crowded in space and scale. Cutaways are needed to show individual model subparts. The camera has to support exploration on the level of a whole virus, as well as on the level of a small molecule. We address these challenges by employing HyperLabels: active labels that---in addition to their annotational role---also support user interaction. Clicks on HyperLabels select the next structure to be explored. Then, we adjust the visualization to showcase the inner composition of the selected subpart and enable further exploration. Finally, we use a breadcrumbs panel for orientation and as a mechanism to traverse upwards in the model hierarchy. We demonstrate our concept of hierarchical 3D model browsing using two exemplary models from meso-scale biology.

Návaznosti

GC18-18647J, projekt VaV

Název: Vizuální analýza interakcí proteinů a ligandů (Akronym: PROLINT)

Investor: Grantová agentura ČR, Visual Analysis of Protein-Ligand Interactions

Citovat

KOUŘIL, David; Tobias ISENBERG; Barbora KOZLÍKOVÁ; Miriah MEYER; Eduard GROELLER a Ivan VIOLA. HyperLabels: Browsing of Dense and Hierarchical Molecular 3D Models. IEEE Transactions on Visualization and Computer Graphics. 2021, roč. 27, č. 8, s. 3493-3504. ISSN 1077-2626. Dostupné z: https://doi.org/10.1109/TVCG.2020.2975583.

@article{1631076,
   author = {Kouřil, David and Isenberg, Tobias and Kozlíková, Barbora and Meyer, Miriah and Groeller, Eduard and Viola, Ivan},
   article_number = {8},
   doi = {https://doi.org/10.1109/TVCG.2020.2975583},
   keywords = {Scientific visualization;navigation;3D molecular data;multi-scale data;hierarchical data;HyperLabels},
   language = {eng},
   issn = {1077-2626},
   journal = {IEEE Transactions on Visualization and Computer Graphics},
   title = {HyperLabels: Browsing of Dense and Hierarchical Molecular 3D Models},
   url = {https://ieeexplore.ieee.org/document/9007694},
   volume = {27},
   year = {2021}
}

TY  - JOUR
ID  - 1631076
AU  - Kouřil, David - Isenberg, Tobias - Kozlíková, Barbora - Meyer, Miriah - Groeller, Eduard - Viola, Ivan
PY  - 2021
TI  - HyperLabels: Browsing of Dense and Hierarchical Molecular 3D Models
JF  - IEEE Transactions on Visualization and Computer Graphics
VL  - 27
IS  - 8
SP  - 3493-3504
EP  - 3493-3504
SN  - 10772626
KW  - Scientific visualization;navigation;3D molecular data;multi-scale data;hierarchical data;HyperLabels
UR  - https://ieeexplore.ieee.org/document/9007694
N2  - We present a method for the browsing of hierarchical 3D models in which we combine the typical navigation of hierarchical structures in a 2D environment---using clicks on nodes, links, or icons---with a 3D spatial data visualization. Our approach is motivated by large molecular models, for which the traditional single-scale navigational metaphors are not suitable. Multi-scale phenomena, e.g., in astronomy or geography, are complex to navigate due to their large data spaces and multi-level organization. Models from structural biology are in addition also densely crowded in space and scale. Cutaways are needed to show individual model subparts. The camera has to support exploration on the level of a whole virus, as well as on the level of a small molecule. We address these challenges by employing HyperLabels: active labels that---in addition to their annotational role---also support user interaction. Clicks on HyperLabels select the next structure to be explored. Then, we adjust the visualization to showcase the inner composition of the selected subpart and enable further exploration. Finally, we use a breadcrumbs panel for orientation and as a mechanism to traverse upwards in the model hierarchy. We demonstrate our concept of hierarchical 3D model browsing using two exemplary models from meso-scale biology.
ER  -

KOUŘIL, David; Tobias ISENBERG; Barbora KOZLÍKOVÁ; Miriah MEYER; Eduard GROELLER a Ivan VIOLA. HyperLabels: Browsing of Dense and Hierarchical Molecular 3D Models. \textit{IEEE Transactions on Visualization and Computer Graphics}. 2021, roč.~27, č.~8, s.~3493-3504. ISSN~1077-2626. Dostupné z: https://doi.org/10.1109/TVCG.2020.2975583.

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