Rapidly Display Glycan Symbols in 3D Structures: 3D-SNFG in
LiteMol

J 2019

Rapidly Display Glycan Symbols in 3D Structures: 3D-SNFG in LiteMol

SEHNAL, David a O.C. GRANT

Základní údaje

Originální název

Rapidly Display Glycan Symbols in 3D Structures: 3D-SNFG in LiteMol

Autoři

SEHNAL, David a O.C. GRANT

Vydání

Journal of Proteome Research, Washington, USA, AMER CHEMICAL SOC, 2019, 1535-3893

Další údaje

Jazyk

angličtina

Typ výsledku

Článek v odborném periodiku

Obor

10608 Biochemistry and molecular biology

Stát vydavatele

Spojené státy

Utajení

není předmětem státního či obchodního tajemství

Odkazy

URL

Impakt faktor

Impact factor: 4.074

Označené pro přenos do RIV

Ano

Kód RIV

RIV/00216224:14740/19:00113368

Organizační jednotka

Středoevropský technologický institut

Klíčová slova anglicky

oligosaccharide; glycan; carbohydrate; glycoprotein; SNFG; 3D-SNFG; visualization; LiteMol; structure; symbol nomenclature for glycans

Štítky

rivok

Příznaky

Mezinárodní význam, Recenzováno

Změněno: 31. 3. 2020 21:51, Mgr. Pavla Foltynová, Ph.D.

Anotace

V originále

The representation of carbohydrates in 3D space using symbols is a powerful visualization method, but such representations are lacking in currently available visualization software. The work presented here allows researchers to display carbohydrate 3D structures as 3D-SNFG symbols using LiteMol from a web browser (e.g., v.litemol.org/?loadFromCS=5T3X). Any PDB ID can be substituted at the end of the URL. Alternatively, the user may enter a PDB ID or upload a structure. LiteMol is available at https://v.litemol.org and automatically depicts any carbohydrate residues as 3D-SNFG symbols. To embed LiteMol in a webpage, visit https://github.com/dsehnal/LiteMol.

Návaznosti

EF16_013/0001777, projekt VaV

Název: ELIXIR-CZ: Budování kapacit

LM2015047, projekt VaV

Název: Česká národní infrastruktura pro biologická data (Akronym: ELIXIR-CZ)

Investor: Ministerstvo školství, mládeže a tělovýchovy ČR, Česká národní infrastruktura pro biologická data

676559, interní kód MU

Název: ELIXIR-EXCELERATE: Fast-track ELIXIR implementation and drive early user exploitation across the life-sciences (Akronym: ELIXIR-EXCELERATE)

Investor: Evropská unie, ELIXIR-EXCELERATE: Fast-track ELIXIR implementation and drive early user exploitation across the life-sciences, RI Research Infrastructures (Excellent Science)

Citovat

SEHNAL, David a O.C. GRANT. Rapidly Display Glycan Symbols in 3D Structures: 3D-SNFG in LiteMol. Journal of Proteome Research. Washington, USA: AMER CHEMICAL SOC, 2019, roč. 18, č. 2, s. 770-774. ISSN 1535-3893. Dostupné z: https://doi.org/10.1021/acs.jproteome.8b00473.

@article{1639700,
   author = {Sehnal, David and Grant, O.C.},
   article_location = {Washington, USA},
   article_number = {2},
   doi = {https://doi.org/10.1021/acs.jproteome.8b00473},
   keywords = {oligosaccharide; glycan; carbohydrate; glycoprotein; SNFG; 3D-SNFG; visualization; LiteMol; structure; symbol nomenclature for glycans},
   language = {eng},
   issn = {1535-3893},
   journal = {Journal of Proteome Research},
   title = {Rapidly Display Glycan Symbols in 3D Structures: 3D-SNFG in LiteMol},
   url = {http://dx.doi.org/10.1021/acs.jproteome.8b00473},
   volume = {18},
   year = {2019}
}

TY  - JOUR
ID  - 1639700
AU  - Sehnal, David - Grant, O.C.
PY  - 2019
TI  - Rapidly Display Glycan Symbols in 3D Structures: 3D-SNFG in LiteMol
JF  - Journal of Proteome Research
VL  - 18
IS  - 2
SP  - 770-774
EP  - 770-774
PB  - AMER CHEMICAL SOC
SN  - 15353893
KW  - oligosaccharide
KW  - glycan
KW  - carbohydrate
KW  - glycoprotein
KW  - SNFG
KW  - 3D-SNFG
KW  - visualization
KW  - LiteMol
KW  - structure
KW  - symbol nomenclature for glycans
UR  - http://dx.doi.org/10.1021/acs.jproteome.8b00473
L2  - http://dx.doi.org/10.1021/acs.jproteome.8b00473
N2  - The representation of carbohydrates in 3D space using symbols is a powerful visualization method, but such representations are lacking in currently available visualization software. The work presented here allows researchers to display carbohydrate 3D structures as 3D-SNFG symbols using LiteMol from a web browser (e.g., v.litemol.org/?loadFromCS=5T3X). Any PDB ID can be substituted at the end of the URL. Alternatively, the user may enter a PDB ID or upload a structure. LiteMol is available at https://v.litemol.org and automatically depicts any carbohydrate residues as 3D-SNFG symbols. To embed LiteMol in a webpage, visit https://github.com/dsehnal/LiteMol.
ER  -

SEHNAL, David a O.C. GRANT. Rapidly Display Glycan Symbols in 3D Structures: 3D-SNFG in LiteMol. \textit{Journal of Proteome Research}. Washington, USA: AMER CHEMICAL SOC, 2019, roč.~18, č.~2, s.~770-774. ISSN~1535-3893. Dostupné z: https://doi.org/10.1021/acs.jproteome.8b00473.

Přehled o publikaci