High-performance macromolecular data delivery and visualization
for the web

J 2020

High-performance macromolecular data delivery and visualization for the web

SEHNAL, David; Radka SVOBODOVÁ; Karel BERKA; Alexander S. ROSE; Stephen K. BURLEY et al.

Základní údaje

Originální název

High-performance macromolecular data delivery and visualization for the web

Autoři

SEHNAL, David; Radka SVOBODOVÁ; Karel BERKA; Alexander S. ROSE; Stephen K. BURLEY; Sameer VELANKAR a Jaroslav KOČA

Vydání

Acta Crystallographica Section D: Structural Biology, Chester, International Union of Crystallography, 2020, 2059-7983

Další údaje

Jazyk

angličtina

Typ výsledku

Článek v odborném periodiku

Obor

10608 Biochemistry and molecular biology

Stát vydavatele

Velká Británie a Severní Irsko

Utajení

není předmětem státního či obchodního tajemství

Odkazy

URL

Impakt faktor

Impact factor: 7.652

Označené pro přenos do RIV

Ano

Kód RIV

RIV/00216224:14740/20:00117882

Organizační jednotka

Středoevropský technologický institut

Klíčová slova anglicky

data delivery; visualization; macromolecules; browser- based; web- based

Štítky

143160, rivok

Příznaky

Mezinárodní význam, Recenzováno

Změněno: 3. 3. 2021 14:28, Mgr. Pavla Foltynová, Ph.D.

Anotace

V originále

Biomacromolecular structural data make up a vital and crucial scientific resource that has grown not only in terms of its amount but also in its size and complexity. Furthermore, these data are accompanied by large and increasing amounts of experimental data. Additionally, the macromolecular data are enriched with value-added annotations describing their biological, physicochemical and structural properties. Today, the scientific community requires fast and fully interactive web visualization to exploit this complex structural information. This article provides a survey of the available cutting-edge web services that address this challenge. Specifically, it focuses on data-delivery problems, discusses the visualization of a single structure, including experimental data and annotations, and concludes with a focus on the results of molecular-dynamics simulations and the visualization of structural ensembles.

Návaznosti

EF16_013/0001777, projekt VaV

Název: ELIXIR-CZ: Budování kapacit

LM2018131, projekt VaV

Název: Česká národní infrastruktura pro biologická data (Akronym: ELIXIR-CZ)

Investor: Ministerstvo školství, mládeže a tělovýchovy ČR, Česká národní infrastruktura pro biologická data

Citovat

SEHNAL, David; Radka SVOBODOVÁ; Karel BERKA; Alexander S. ROSE; Stephen K. BURLEY; Sameer VELANKAR a Jaroslav KOČA. High-performance macromolecular data delivery and visualization for the web. Acta Crystallographica Section D: Structural Biology. Chester: International Union of Crystallography, 2020, roč. 76, December 2020, s. 1167-1173. ISSN 2059-7983. Dostupné z: https://doi.org/10.1107/S2059798320014515.

@article{1730510,
   author = {Sehnal, David and Svobodová, Radka and Berka, Karel and Rose, Alexander S. and Burley, Stephen K. and Velankar, Sameer and Koča, Jaroslav},
   article_location = {Chester},
   article_number = {December 2020},
   doi = {https://doi.org/10.1107/S2059798320014515},
   keywords = {data delivery; visualization; macromolecules; browser- based; web- based},
   language = {eng},
   issn = {2059-7983},
   journal = {Acta Crystallographica Section D: Structural Biology},
   title = {High-performance macromolecular data delivery and visualization for the web},
   url = {https://doi.org/10.1107/S2059798320014515},
   volume = {76},
   year = {2020}
}

TY  - JOUR
ID  - 1730510
AU  - Sehnal, David - Svobodová, Radka - Berka, Karel - Rose, Alexander S. - Burley, Stephen K. - Velankar, Sameer - Koča, Jaroslav
PY  - 2020
TI  - High-performance macromolecular data delivery and visualization for the web
JF  - Acta Crystallographica Section D: Structural Biology
VL  - 76
IS  - December 2020
SP  - 1167-1173
EP  - 1167-1173
PB  - International Union of Crystallography
SN  - 20597983
KW  - data delivery
KW  - visualization
KW  - macromolecules
KW  - browser- based
KW  - web- based
UR  - https://doi.org/10.1107/S2059798320014515
L2  - https://doi.org/10.1107/S2059798320014515
N2  - Biomacromolecular structural data make up a vital and crucial scientific resource that has grown not only in terms of its amount but also in its size and complexity. Furthermore, these data are accompanied by large and increasing amounts of experimental data. Additionally, the macromolecular data are enriched with value-added annotations describing their biological, physicochemical and structural properties. Today, the scientific community requires fast and fully interactive web visualization to exploit this complex structural information. This article provides a survey of the available cutting-edge web services that address this challenge. Specifically, it focuses on data-delivery problems, discusses the visualization of a single structure, including experimental data and annotations, and concludes with a focus on the results of molecular-dynamics simulations and the visualization of structural ensembles.
ER  -

SEHNAL, David; Radka SVOBODOVÁ; Karel BERKA; Alexander S. ROSE; Stephen K. BURLEY; Sameer VELANKAR a Jaroslav KOČA. High-performance macromolecular data delivery and visualization for the web. \textit{Acta Crystallographica Section D: Structural Biology}. Chester: International Union of Crystallography, 2020, roč.~76, December 2020, s.~1167-1173. ISSN~2059-7983. Dostupné z: https://doi.org/10.1107/S2059798320014515.

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