Visualization and Analysis of Protein Structures with LiteMol
Suite

C 2020

Visualization and Analysis of Protein Structures with LiteMol Suite

SEHNAL, David; Radka SVOBODOVÁ; K. BERKA; Lukáš PRAVDA; Adam MIDLIK et al.

Základní údaje

Originální název

Visualization and Analysis of Protein Structures with LiteMol Suite

Autoři

SEHNAL, David; Radka SVOBODOVÁ; K. BERKA; Lukáš PRAVDA; Adam MIDLIK a Jaroslav KOČA

Vydání

TOTOWA, STRUCTURAL BIOINFORMATICS: METHODS AND PROTOCOLS, od s. 1-13, 13 s. 2112, 2020

Nakladatel

HUMANA PRESS INC

Další údaje

Jazyk

angličtina

Typ výsledku

Kapitola resp. kapitoly v odborné knize

Obor

10608 Biochemistry and molecular biology

Stát vydavatele

Spojené státy

Utajení

není předmětem státního či obchodního tajemství

Forma vydání

elektronická verze "online"

Odkazy

URL

Označené pro přenos do RIV

Ano

Kód RIV

RIV/00216224:14740/20:00122562

Organizační jednotka

Středoevropský technologický institut

ISBN

978-1-0716-0270-6

Klíčová slova anglicky

Protein visualization; Atom selection; Validation report; Ligand representation; Electron density

Štítky

143160, rivok

Příznaky

Mezinárodní význam, Recenzováno

Změněno: 18. 5. 2022 13:22, Mgr. Pavla Foltynová, Ph.D.

Anotace

V originále

LiteMol suite is an innovative solution that enables near-instant delivery of model and experimental biomacromolecular structural data, providing users with an interactive and responsive experience in all modern web browsers and mobile devices. LiteMol suite is a combination of data delivery services (CoordinateServer and DensityServer), compression format (BinaryCIF), and a molecular viewer (LiteMol Viewer). The LiteMol suite is integrated into Protein Data Bank in Europe (PDBe) and other life science web applications (e.g., UniProt, Ensemble, SIB, and CNRS services), it is freely available at https://litemol.org, and its source code is available via GitHub. LiteMol suite provides advanced functionality (annotations and their visualization, powerful selection features), and this chapter will describe their use for visual inspection of protein structures.

Návaznosti

ATCZ40, interní kód MU

Název: Creating synergies between research infrastructures to stimulate innovation in the cross-border region (Akronym: RIAT-CZ)

Investor: Ministerstvo pro místní rozvoj ČR, Creating synergies between research infrastructures to stimulate innovation in the cross-border region

EF16_013/0001777, projekt VaV

Název: ELIXIR-CZ: Budování kapacit

LM2015047, projekt VaV

Název: Česká národní infrastruktura pro biologická data (Akronym: ELIXIR-CZ)

Investor: Ministerstvo školství, mládeže a tělovýchovy ČR, Česká národní infrastruktura pro biologická data

676559, interní kód MU

Název: ELIXIR-EXCELERATE: Fast-track ELIXIR implementation and drive early user exploitation across the life-sciences (Akronym: ELIXIR-EXCELERATE)

Investor: Evropská unie, ELIXIR-EXCELERATE: Fast-track ELIXIR implementation and drive early user exploitation across the life-sciences, RI Research Infrastructures (Excellent Science)

Citovat

SEHNAL, David; Radka SVOBODOVÁ; K. BERKA; Lukáš PRAVDA; Adam MIDLIK a Jaroslav KOČA. Visualization and Analysis of Protein Structures with LiteMol Suite. Online. In STRUCTURAL BIOINFORMATICS: METHODS AND PROTOCOLS. TOTOWA: HUMANA PRESS INC, 2020, s. 1-13. 2112. ISBN 978-1-0716-0270-6. Dostupné z: https://doi.org/10.1007/978-1-0716-0270-6_1.

@inbook{1797280,
   author = {Sehnal, David and Svobodová, Radka and Berka, K. and Pravda, Lukáš and Midlik, Adam and Koča, Jaroslav},
   address = {TOTOWA},
   booktitle = {STRUCTURAL BIOINFORMATICS: METHODS AND PROTOCOLS},
   doi = {https://doi.org/10.1007/978-1-0716-0270-6_1},
   keywords = {Protein visualization; Atom selection; Validation report; Ligand representation; Electron density},
   howpublished = {elektronická verze "online"},
   language = {eng},
   location = {TOTOWA},
   isbn = {978-1-0716-0270-6},
   pages = {1-13},
   publisher = {HUMANA PRESS INC},
   title = {Visualization and Analysis of Protein Structures with LiteMol Suite},
   url = {https://www.springer.com/gp/book/9781071602690},
   year = {2020}
}

TY  - CHAP
ID  - 1797280
AU  - Sehnal, David - Svobodová, Radka - Berka, K. - Pravda, Lukáš - Midlik, Adam - Koča, Jaroslav
PY  - 2020
TI  - Visualization and Analysis of Protein Structures with LiteMol Suite
VL  - 2112
PB  - HUMANA PRESS INC
CY  - TOTOWA
SN  - 9781071602706
KW  - Protein visualization
KW  - Atom selection
KW  - Validation report
KW  - Ligand representation
KW  - Electron density
UR  - https://www.springer.com/gp/book/9781071602690
N2  - LiteMol suite is an innovative solution that enables near-instant delivery of model and experimental biomacromolecular structural data, providing users with an interactive and responsive experience in all modern web browsers and mobile devices. LiteMol suite is a combination of data delivery services (CoordinateServer and DensityServer), compression format (BinaryCIF), and a molecular viewer (LiteMol Viewer). The LiteMol suite is integrated into Protein Data Bank in Europe (PDBe) and other life science web applications (e.g., UniProt, Ensemble, SIB, and CNRS services), it is freely available at https://litemol.org, and its source code is available via GitHub. LiteMol suite provides advanced functionality (annotations and their visualization, powerful selection features), and this chapter will describe their use for visual inspection of protein structures.
ER  -

SEHNAL, David; Radka SVOBODOVÁ; K. BERKA; Lukáš PRAVDA; Adam MIDLIK a Jaroslav KOČA. Visualization and Analysis of Protein Structures with LiteMol Suite. Online. In \textit{STRUCTURAL BIOINFORMATICS: METHODS AND PROTOCOLS}. TOTOWA: HUMANA PRESS INC, 2020, s.~1-13. 2112. ISBN~978-1-0716-0270-6. Dostupné z: https://doi.org/10.1007/978-1-0716-0270-6\_{}1.

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