Chromosome size matters: genome evolution in the cyperid clade

J 2022

Chromosome size matters: genome evolution in the cyperid clade

ELLIOTT, Tammy L; František ZEDEK; Russell L. BARRETT; Jeremy J. BRUHL; Marcial ESCUDERO et al.

Základní údaje

Originální název

Chromosome size matters: genome evolution in the cyperid clade

Autoři

Vydání

Annals of Botany, Oxford, Oxford University Press, 2022, 0305-7364

Další údaje

Jazyk

angličtina

Typ výsledku

Článek v odborném periodiku

Obor

10611 Plant sciences, botany

Stát vydavatele

Velká Británie a Severní Irsko

Utajení

není předmětem státního či obchodního tajemství

Odkazy

URL

Impakt faktor

Impact factor: 4.200

Označené pro přenos do RIV

Ano

Kód RIV

RIV/00216224:14310/22:00128323

Organizační jednotka

Přírodovědecká fakulta

Klíčová slova anglicky

Chromosome number; chromosome size; Cyperaceae; distribution range size; genome size; holocentric chromosomes; holokinetic drive; Juncaceae; Thurniaceae

Štítky

14314020, rivok

Příznaky

Mezinárodní význam, Recenzováno

Změněno: 6. 1. 2024 00:23, prof. RNDr. Petr Bureš, Ph.D.

Anotace

V originále

Center dot Background and Aims While variation in genome size and chromosome numbers and their consequences are often investigated in plants, the biological relevance of variation in chromosome size remains poorly known. Here, we examine genome and mean chromosome size in the cyperid clade (families Cyperaceae, Juncaceae and Thurniaceae), which is the largest vascular plant lineage with predominantly holocentric chromosomes. center dot Methods We measured genome size in 436 species of cyperids using flow cytometry, and augment these data with previously published datasets. We then separately compared genome and mean chromosome sizes (2C/2n) amongst the major lineages of cyperids and analysed how these two genomic traits are associated with various environmental factors using phylogenetically informed methods. center dot Key Results We show that cyperids have the smallest mean chromosome sizes recorded in seed plants, with a large divergence between the smallest and largest values. We found that cyperid species with smaller chromosomes have larger geographical distributions and that there is a strong inverse association between mean chromosome size and number across this lineage. center dot Conclusions The distinct patterns in genome size and mean chromosome size across the cyperids might be explained by holokinetic drive. The numerous small chromosomes might function to increase genetic diversity in this lineage where crossovers are limited during meiosis.

Návaznosti

GA20-15989S, projekt VaV

Název: Evoluce velikosti genomu - centromerický drajv v nové roli (Akronym: Centrogenomtah)

Investor: Grantová agentura ČR, Evolution of genome size - a new role for the centromere drive

LM2018140, projekt VaV

Název: e-Infrastruktura CZ (Akronym: e-INFRA CZ)

Investor: Ministerstvo školství, mládeže a tělovýchovy ČR, e-Infrastruktura CZ

Citovat

ELLIOTT, Tammy L; František ZEDEK; Russell L. BARRETT; Jeremy J. BRUHL; Marcial ESCUDERO; Zdenka HROUDOVA; Simon JOLY; Isabel LARRIDON; Modesto LUCENO; Jose Ignacio MARQUEZ-CORRO; Santiago MARTIN-BRAVO; A Muthama MUASYA; Petr ŠMARDA; William Wayt THOMAS; Karen L WILSON a Petr BUREŠ. Chromosome size matters: genome evolution in the cyperid clade. Annals of Botany. Oxford: Oxford University Press, 2022, roč. 130, č. 7, s. 999-1014. ISSN 0305-7364. Dostupné z: https://doi.org/10.1093/aob/mcac136.

@article{2250048,
   author = {Elliott, Tammy L and Zedek, František and Barrett, Russell L. and Bruhl, Jeremy J. and Escudero, Marcial and Hroudova, Zdenka and Joly, Simon and Larridon, Isabel and Luceno, Modesto and MarquezandCorro, Jose Ignacio and MartinandBravo, Santiago and Muasya, A Muthama and Šmarda, Petr and Thomas, William Wayt and Wilson, Karen L and Bureš, Petr},
   article_location = {Oxford},
   article_number = {7},
   doi = {https://doi.org/10.1093/aob/mcac136},
   keywords = {Chromosome number; chromosome size; Cyperaceae; distribution range size; genome size; holocentric chromosomes; holokinetic drive; Juncaceae; Thurniaceae},
   language = {eng},
   issn = {0305-7364},
   journal = {Annals of Botany},
   title = {Chromosome size matters: genome evolution in the cyperid clade},
   url = {https://doi.org/10.1093/aob/mcac136},
   volume = {130},
   year = {2022}
}

TY  - JOUR
ID  - 2250048
AU  - Elliott, Tammy L - Zedek, František - Barrett, Russell L. - Bruhl, Jeremy J. - Escudero, Marcial - Hroudova, Zdenka - Joly, Simon - Larridon, Isabel - Luceno, Modesto - Marquez-Corro, Jose Ignacio - Martin-Bravo, Santiago - Muasya, A Muthama - Šmarda, Petr - Thomas, William Wayt - Wilson, Karen L - Bureš, Petr
PY  - 2022
TI  - Chromosome size matters: genome evolution in the cyperid clade
JF  - Annals of Botany
VL  - 130
IS  - 7
SP  - 999-1014
EP  - 999-1014
PB  - Oxford University Press
SN  - 03057364
KW  - Chromosome number
KW  - chromosome size
KW  - Cyperaceae
KW  - distribution range size
KW  - genome size
KW  - holocentric chromosomes
KW  - holokinetic drive
KW  - Juncaceae
KW  - Thurniaceae
UR  - https://doi.org/10.1093/aob/mcac136
N2  - Center dot Background and Aims While variation in genome size and chromosome numbers and their consequences are often investigated in plants, the biological relevance of variation in chromosome size remains poorly known. Here, we examine genome and mean chromosome size in the cyperid clade (families Cyperaceae, Juncaceae and Thurniaceae), which is the largest vascular plant lineage with predominantly holocentric chromosomes. center dot Methods We measured genome size in 436 species of cyperids using flow cytometry, and augment these data with previously published datasets. We then separately compared genome and mean chromosome sizes (2C/2n) amongst the major lineages of cyperids and analysed how these two genomic traits are associated with various environmental factors using phylogenetically informed methods. center dot Key Results We show that cyperids have the smallest mean chromosome sizes recorded in seed plants, with a large divergence between the smallest and largest values. We found that cyperid species with smaller chromosomes have larger geographical distributions and that there is a strong inverse association between mean chromosome size and number across this lineage. center dot Conclusions The distinct patterns in genome size and mean chromosome size across the cyperids might be explained by holokinetic drive. The numerous small chromosomes might function to increase genetic diversity in this lineage where crossovers are limited during meiosis.
ER  -

ELLIOTT, Tammy L; František ZEDEK; Russell L. BARRETT; Jeremy J. BRUHL; Marcial ESCUDERO; Zdenka HROUDOVA; Simon JOLY; Isabel LARRIDON; Modesto LUCENO; Jose Ignacio MARQUEZ-CORRO; Santiago MARTIN-BRAVO; A Muthama MUASYA; Petr ŠMARDA; William Wayt THOMAS; Karen L WILSON a Petr BUREŠ. Chromosome size matters: genome evolution in the cyperid clade. \textit{Annals of Botany}. Oxford: Oxford University Press, 2022, roč.~130, č.~7, s.~999-1014. ISSN~0305-7364. Dostupné z: https://doi.org/10.1093/aob/mcac136.

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