Allosteric Communication in the Multifunctional and Redox NQO1
Protein Studied by Cavity-Making Mutations

J 2022

Allosteric Communication in the Multifunctional and Redox NQO1 Protein Studied by Cavity-Making Mutations

PACHECO-GARCIA, Juan Luis, Dmitry S LOGINOV, Ernesto ANOZ-CARBONELL, Pavla VANKOVA, Rogelio PALOMINO-MORALES et. al.

Základní údaje

Originální název

Allosteric Communication in the Multifunctional and Redox NQO1 Protein Studied by Cavity-Making Mutations

Autoři

PACHECO-GARCIA, Juan Luis, Dmitry S LOGINOV, Ernesto ANOZ-CARBONELL, Pavla VANKOVA, Rogelio PALOMINO-MORALES, Eduardo SALIDO, Petr MAN, Milagros MEDINA, Athi N NAGANATHAN a Angel L PEY

Vydání

Antioxidants, Basel, MDPI, 2022, 2076-3921

Další údaje

Jazyk

angličtina

Typ výsledku

Článek v odborném periodiku

Obor

10608 Biochemistry and molecular biology

Stát vydavatele

Švýcarsko

Utajení

není předmětem státního či obchodního tajemství

Odkazy

URL

Impakt faktor

Impact factor: 7.000

Kód RIV

RIV/00216224:14740/22:00128776

Organizační jednotka

Středoevropský technologický institut

DOI

http://dx.doi.org/10.3390/antiox11061110

UT WoS

000816602700001

Klíčová slova anglicky

antioxidant defense; flavoprotein; FAD binding; structural perturbation; protein core; allosterism; cavity-making mutation

Štítky

ne MU, rivok

Příznaky

Mezinárodní význam, Recenzováno

Změněno: 28. 2. 2023 19:17, Mgr. Pavla Foltynová, Ph.D.

Anotace

V originále

Allosterism is a common phenomenon in protein biochemistry that allows rapid regulation of protein stability; dynamics and function. However, the mechanisms by which allosterism occurs (by mutations or post-translational modifications (PTMs)) may be complex, particularly due to long-range propagation of the perturbation across protein structures. In this work, we have investigated allosteric communication in the multifunctional, cancer-related and antioxidant protein NQO1 by mutating several fully buried leucine residues (L7, L10 and L30) to smaller residues (V, A and G) at sites in the N-terminal domain. In almost all cases, mutated residues were not close to the FAD or the active site. Mutations L -> G strongly compromised conformational stability and solubility, and L30A and L30V also notably decreased solubility. The mutation L10A, closer to the FAD binding site, severely decreased FAD binding affinity (approximate to 20 fold vs. WT) through long-range and context-dependent effects. Using a combination of experimental and computational analyses, we show that most of the effects are found in the apo state of the protein, in contrast to other common polymorphisms and PTMs previously characterized in NQO1. The integrated study presented here is a first step towards a detailed structural-functional mapping of the mutational landscape of NQO1, a multifunctional and redox signaling protein of high biomedical relevance.

Návaznosti

90127, velká výzkumná infrastruktura

Název: CIISB II

Citovat

PACHECO-GARCIA, Juan Luis, Dmitry S LOGINOV, Ernesto ANOZ-CARBONELL, Pavla VANKOVA, Rogelio PALOMINO-MORALES, Eduardo SALIDO, Petr MAN, Milagros MEDINA, Athi N NAGANATHAN a Angel L PEY. Allosteric Communication in the Multifunctional and Redox NQO1 Protein Studied by Cavity-Making Mutations. Antioxidants. Basel: MDPI, 2022, roč. 11, č. 6, s. 1110-1125. ISSN 2076-3921. Dostupné z: https://dx.doi.org/10.3390/antiox11061110.

@article{2262563,
   author = {PachecoandGarcia, Juan Luis and Loginov, Dmitry S and AnozandCarbonell, Ernesto and Vankova, Pavla and PalominoandMorales, Rogelio and Salido, Eduardo and Man, Petr and Medina, Milagros and Naganathan, Athi N and Pey, Angel L},
   article_location = {Basel},
   article_number = {6},
   doi = {http://dx.doi.org/10.3390/antiox11061110},
   keywords = {antioxidant defense; flavoprotein; FAD binding; structural perturbation; protein core; allosterism; cavity-making mutation},
   language = {eng},
   issn = {2076-3921},
   journal = {Antioxidants},
   title = {Allosteric Communication in the Multifunctional and Redox NQO1 Protein Studied by Cavity-Making Mutations},
   url = {https://www.mdpi.com/2076-3921/11/6/1110},
   volume = {11},
   year = {2022}
}

TY  - JOUR
ID  - 2262563
AU  - Pacheco-Garcia, Juan Luis - Loginov, Dmitry S - Anoz-Carbonell, Ernesto - Vankova, Pavla - Palomino-Morales, Rogelio - Salido, Eduardo - Man, Petr - Medina, Milagros - Naganathan, Athi N - Pey, Angel L
PY  - 2022
TI  - Allosteric Communication in the Multifunctional and Redox NQO1 Protein Studied by Cavity-Making Mutations
JF  - Antioxidants
VL  - 11
IS  - 6
SP  - 1110
EP  - 1110
PB  - MDPI
SN  - 20763921
KW  - antioxidant defense
KW  - flavoprotein
KW  - FAD binding
KW  - structural perturbation
KW  - protein core
KW  - allosterism
KW  - cavity-making mutation
UR  - https://www.mdpi.com/2076-3921/11/6/1110
N2  - Allosterism is a common phenomenon in protein biochemistry that allows rapid regulation of protein stability; dynamics and function. However, the mechanisms by which allosterism occurs (by mutations or post-translational modifications (PTMs)) may be complex, particularly due to long-range propagation of the perturbation across protein structures. In this work, we have investigated allosteric communication in the multifunctional, cancer-related and antioxidant protein NQO1 by mutating several fully buried leucine residues (L7, L10 and L30) to smaller residues (V, A and G) at sites in the N-terminal domain. In almost all cases, mutated residues were not close to the FAD or the active site. Mutations L -> G strongly compromised conformational stability and solubility, and L30A and L30V also notably decreased solubility. The mutation L10A, closer to the FAD binding site, severely decreased FAD binding affinity (approximate to 20 fold vs. WT) through long-range and context-dependent effects. Using a combination of experimental and computational analyses, we show that most of the effects are found in the apo state of the protein, in contrast to other common polymorphisms and PTMs previously characterized in NQO1. The integrated study presented here is a first step towards a detailed structural-functional mapping of the mutational landscape of NQO1, a multifunctional and redox signaling protein of high biomedical relevance.
ER  -

PACHECO-GARCIA, Juan Luis, Dmitry S LOGINOV, Ernesto ANOZ-CARBONELL, Pavla VANKOVA, Rogelio PALOMINO-MORALES, Eduardo SALIDO, Petr MAN, Milagros MEDINA, Athi N NAGANATHAN a Angel L PEY. Allosteric Communication in the Multifunctional and Redox NQO1 Protein Studied by Cavity-Making Mutations. \textit{Antioxidants}. Basel: MDPI, 2022, roč.~11, č.~6, s.~1110-1125. ISSN~2076-3921. Dostupné z: https://dx.doi.org/10.3390/antiox11061110.

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