2023
The evolution of the hypotetraploid Catolobus pendulus genome – the poorly known sister species of Capsella
FARHAT, Perla, Terezie MALÍK MANDÁKOVÁ, Jan DIVÍŠEK, Hiroshi KUDOH, Dmitry A. GERMAN et. al.Základní údaje
Originální název
The evolution of the hypotetraploid Catolobus pendulus genome – the poorly known sister species of Capsella
Autoři
FARHAT, Perla (422 Libanon, domácí), Terezie MALÍK MANDÁKOVÁ (203 Česká republika, domácí), Jan DIVÍŠEK (203 Česká republika, domácí), Hiroshi KUDOH, Dmitry A. GERMAN a Martin LYSÁK (203 Česká republika, garant, domácí)
Vydání
Frontiers in Plant Science, Lausanne (Switzerland), Frontiers Media SA, 2023, 1664-462X
Další údaje
Jazyk
angličtina
Typ výsledku
Článek v odborném periodiku
Obor
10611 Plant sciences, botany
Stát vydavatele
Švýcarsko
Utajení
není předmětem státního či obchodního tajemství
Odkazy
Impakt faktor
Impact factor: 5.600 v roce 2022
Kód RIV
RIV/00216224:14740/23:00132119
Organizační jednotka
Středoevropský technologický institut
UT WoS
000991541300001
Klíčová slova anglicky
chromosome painting; Hyb-Seq; Arabidopsis-related model systems; Brassicaceae; Cruciferae; polyploidy; diploidization; whole-genome duplication (WGD)
Příznaky
Mezinárodní význam, Recenzováno
Změněno: 9. 10. 2024 12:24, Mgr. Eva Dubská
Anotace
V originále
The establishment of Arabidopsis as the most important plant model has also brought other crucifer species into the spotlight of comparative research. While the genus Capsella has become a prominent crucifer model system, its closest relative has been overlooked. The unispecific genus Catolobus is native to temperate Eurasian woodlands, from eastern Europe to the Russian Far East. Here, we analyzed chromosome number, genome structure, intraspecific genetic variation, and habitat suitability of Catolobus pendulus throughout its range. Unexpectedly, all analyzed populations were hypotetraploid (2n = 30, similar to 330 Mb). Comparative cytogenomic analysis revealed that the Catolobus genome arose by a whole-genome duplication in a diploid genome resembling Ancestral Crucifer Karyotype (ACK, n = 8). In contrast to the much younger Capsella allotetraploid genomes, the presumably autotetraploid Catolobus genome (2n = 32) arose early after the Catolobus/Capsella divergence. Since its origin, the tetraploid Catolobus genome has undergone chromosomal rediploidization, including a reduction in chromosome number from 2n = 32 to 2n = 30. Diploidization occurred through end-to-end chromosome fusion and other chromosomal rearrangements affecting a total of six of 16 ancestral chromosomes. The hypotetraploid Catolobus cytotype expanded toward its present range, accompanied by some longitudinal genetic differentiation. The sister relationship between Catolobus and Capsella allows comparative studies of tetraploid genomes of contrasting ages and different degrees of genome diploidization.
Návaznosti
GA21-03909S, projekt VaV |
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LM2018140, projekt VaV |
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