Fast satellite DNA evolution in Nothobranchius annual
killifishes

J 2023

Fast satellite DNA evolution in Nothobranchius annual killifishes

VOLENIKOVA, Anna; Karolina LUKSIKOVA; Pablo MORA; Tomas PAVLICA; Marie ALTMANOVA et al.

Základní údaje

Originální název

Fast satellite DNA evolution in Nothobranchius annual killifishes

Autoři

VOLENIKOVA, Anna; Karolina LUKSIKOVA; Pablo MORA; Tomas PAVLICA; Marie ALTMANOVA; Jana STUNDLOVA; Sarka PELIKANOVA; Sergey A SIMANOVSKY; Marek JANKASEK; Martin REICHARD; Petr NGUYEN a Alexandr SEMBER

Vydání

Chromosome Research, DORDRECHT, Springer Netherlands, 2023, 0967-3849

Další údaje

Jazyk

angličtina

Typ výsledku

Článek v odborném periodiku

Obor

10608 Biochemistry and molecular biology

Stát vydavatele

Nizozemské království

Utajení

není předmětem státního či obchodního tajemství

Odkazy

URL

Impakt faktor

Impact factor: 2.400

Označené pro přenos do RIV

Ano

Kód RIV

RIV/00216224:14310/23:00132725

Organizační jednotka

Přírodovědecká fakulta

Klíčová slova anglicky

Centromere drive; Constitutive heterochromatin; RepeatExplorer; Repetitive sequences; satDNA

Štítky

14314020, rivok

Příznaky

Mezinárodní význam, Recenzováno

Změněno: 8. 3. 2024 14:32, Mgr. Marie Novosadová Šípková, DiS.

Anotace

V originále

Satellite DNA (satDNA) is a rapidly evolving class of tandem repeats, with some monomers being involved in centromere organization and function. To identify repeats associated with (peri)centromeric regions, we investigated satDNA across Southern and Coastal clades of African annual killifishes of the genus Nothobranchius. Molecular cytogenetic and bioinformatic analyses revealed that two previously identified satellites, designated here as NkadSat01-77 and NfurSat01-348, are associated with (peri)centromeres only in one lineage of the Southern clade. NfurSat01-348 was, however, additionally detected outside centromeres in three members of the Coastal clade. We also identified a novel satDNA, NrubSat01-48, associated with (peri)centromeres in N. foerschi, N. guentheri, and N. rubripinnis. Our findings revealed fast turnover of satDNA associated with (peri)centromeres and different trends in their evolution in two clades of the genus Nothobranchius.

Návaznosti

LM2018131, projekt VaV

Název: Česká národní infrastruktura pro biologická data (Akronym: ELIXIR-CZ)

Investor: Ministerstvo školství, mládeže a tělovýchovy ČR, Česká národní infrastruktura pro biologická data

LM2018140, projekt VaV

Název: e-Infrastruktura CZ (Akronym: e-INFRA CZ)

Investor: Ministerstvo školství, mládeže a tělovýchovy ČR, e-Infrastruktura CZ

Citovat

VOLENIKOVA, Anna; Karolina LUKSIKOVA; Pablo MORA; Tomas PAVLICA; Marie ALTMANOVA; Jana STUNDLOVA; Sarka PELIKANOVA; Sergey A SIMANOVSKY; Marek JANKASEK; Martin REICHARD; Petr NGUYEN a Alexandr SEMBER. Fast satellite DNA evolution in Nothobranchius annual killifishes. Chromosome Research. DORDRECHT: Springer Netherlands, 2023, roč. 31, č. 4, s. "33", 19 s. ISSN 0967-3849. Dostupné z: https://doi.org/10.1007/s10577-023-09742-8.

@article{2355284,
   author = {Volenikova, Anna and Luksikova, Karolina and Mora, Pablo and Pavlica, Tomas and Altmanova, Marie and Stundlova, Jana and Pelikanova, Sarka and Simanovsky, Sergey A and Jankasek, Marek and Reichard, Martin and Nguyen, Petr and Sember, Alexandr},
   article_location = {DORDRECHT},
   article_number = {4},
   doi = {https://doi.org/10.1007/s10577-023-09742-8},
   keywords = {Centromere drive; Constitutive heterochromatin; RepeatExplorer; Repetitive sequences; satDNA},
   language = {eng},
   issn = {0967-3849},
   journal = {Chromosome Research},
   title = {Fast satellite DNA evolution in Nothobranchius annual killifishes},
   url = {https://doi.org/10.1007/s10577-023-09742-8},
   volume = {31},
   year = {2023}
}

TY  - JOUR
ID  - 2355284
AU  - Volenikova, Anna - Luksikova, Karolina - Mora, Pablo - Pavlica, Tomas - Altmanova, Marie - Stundlova, Jana - Pelikanova, Sarka - Simanovsky, Sergey A - Jankasek, Marek - Reichard, Martin - Nguyen, Petr - Sember, Alexandr
PY  - 2023
TI  - Fast satellite DNA evolution in Nothobranchius annual killifishes
JF  - Chromosome Research
VL  - 31
IS  - 4
SP  - "33"
EP  - "33"
PB  - Springer Netherlands
SN  - 09673849
KW  - Centromere drive
KW  - Constitutive heterochromatin
KW  - RepeatExplorer
KW  - Repetitive sequences
KW  - satDNA
UR  - https://doi.org/10.1007/s10577-023-09742-8
N2  - Satellite DNA (satDNA) is a rapidly evolving class of tandem repeats, with some monomers being involved in centromere organization and function. To identify repeats associated with (peri)centromeric regions, we investigated satDNA across Southern and Coastal clades of African annual killifishes of the genus Nothobranchius. Molecular cytogenetic and bioinformatic analyses revealed that two previously identified satellites, designated here as NkadSat01-77 and NfurSat01-348, are associated with (peri)centromeres only in one lineage of the Southern clade. NfurSat01-348 was, however, additionally detected outside centromeres in three members of the Coastal clade. We also identified a novel satDNA, NrubSat01-48, associated with (peri)centromeres in N. foerschi, N. guentheri, and N. rubripinnis. Our findings revealed fast turnover of satDNA associated with (peri)centromeres and different trends in their evolution in two clades of the genus Nothobranchius.
ER  -

VOLENIKOVA, Anna; Karolina LUKSIKOVA; Pablo MORA; Tomas PAVLICA; Marie ALTMANOVA; Jana STUNDLOVA; Sarka PELIKANOVA; Sergey A SIMANOVSKY; Marek JANKASEK; Martin REICHARD; Petr NGUYEN a Alexandr SEMBER. Fast satellite DNA evolution in Nothobranchius annual killifishes. \textit{Chromosome Research}. DORDRECHT: Springer Netherlands, 2023, roč.~31, č.~4, s.~''33'', 19 s. ISSN~0967-3849. Dostupné z: https://doi.org/10.1007/s10577-023-09742-8.

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