Kinetochore and ionomic adaptation to whole-genome duplication
in Cochlearia shows evolutionary convergence in three
autopolyploids

J 2024

Kinetochore and ionomic adaptation to whole-genome duplication in Cochlearia shows evolutionary convergence in three autopolyploids

BRAY, Sian M.; Tuomas HAMALA; Min ZHOU; Silvia BUSOMS; Sina FISCHER et al.

Základní údaje

Originální název

Kinetochore and ionomic adaptation to whole-genome duplication in Cochlearia shows evolutionary convergence in three autopolyploids

Autoři

Vydání

Cell Reports, CAMBRIDGE, Cell Press, 2024, 2211-1247

Další údaje

Jazyk

angličtina

Typ výsledku

Článek v odborném periodiku

Obor

10611 Plant sciences, botany

Stát vydavatele

Spojené státy

Utajení

není předmětem státního či obchodního tajemství

Odkazy

URL

Impakt faktor

Impact factor: 6.900

Označené pro přenos do RIV

Ano

Kód RIV

RIV/00216224:14740/24:00137632

Organizační jednotka

Středoevropský technologický institut

Klíčová slova anglicky

II SUBUNIT RPB9; BOX RNA HELICASES; ARABIDOPSIS-THALIANA; POPULATION-STRUCTURE; CONDENSIN II; GENETIC DIFFERENTIATION; CENP-C; POLYPLOIDY; PROTEIN; BRASSICACEAE

Štítky

rivok

Příznaky

Mezinárodní význam, Recenzováno

Změněno: 3. 6. 2025 12:54, Mgr. Eva Dubská

Anotace

V originále

Whole-genome duplication (WGD) occurs in all kingdoms and impacts speciation, domestication, and cancer outcome. However, doubled DNA management can be challenging for nascent polyploids. The study of within-species polyploidy (autopolyploidy) permits focus on this DNA management aspect, decoupling it from the confounding effects of hybridization (in allopolyploid hybrids). How is autopolyploidy tolerated, and how do young polyploids stabilize? Here, we introduce a powerful model to address this: the genus Cochlearia, which has experienced many polyploidization events. We assess meiosis and other polyploidrelevant phenotypes, generate a chromosome-scale genome, and sequence 113 individuals from 33 ploidy-contrasting populations. We detect an obvious autopolyploidy-associated selection signal at kinetochore components and ion transporters. Modeling the selected alleles, we detail evidence of the kinetochore complex mediating adaptation to polyploidy. We compare candidates in independent autopolyploids across three genera separated by 40 million years, highlighting a common function at the process and gene levels, indicating evolutionary flexibility in response to polyploidy.

Návaznosti

90254, velká výzkumná infrastruktura

Název: e-INFRA CZ II

Citovat

BRAY, Sian M.; Tuomas HAMALA; Min ZHOU; Silvia BUSOMS; Sina FISCHER; Stuart D. DESJARDINS; Terezie MALÍK MANDÁKOVÁ; Chris MOORE; Thomas C. MATHERS; Laura COWAN; Patrick MONNAHAN; Jordan KOCH; Eva M. WOLF; Martin LYSÁK; Filip KOLAR; James D. HIGGINS; Marcus A. KOCH a Levi YANT. Kinetochore and ionomic adaptation to whole-genome duplication in Cochlearia shows evolutionary convergence in three autopolyploids. Cell Reports. CAMBRIDGE: Cell Press, 2024, roč. 43, č. 8, s. 1-30. ISSN 2211-1247. Dostupné z: https://doi.org/10.1016/j.celrep.2024.114576.

@article{2451677,
   author = {Bray, Sian M. and Hamala, Tuomas and Zhou, Min and Busoms, Silvia and Fischer, Sina and Desjardins, Stuart D. and Malík Mandáková, Terezie and Moore, Chris and Mathers, Thomas C. and Cowan, Laura and Monnahan, Patrick and Koch, Jordan and Wolf, Eva M. and Lysák, Martin and Kolar, Filip and Higgins, James D. and Koch, Marcus A. and Yant, Levi},
   article_location = {CAMBRIDGE},
   article_number = {8},
   doi = {https://doi.org/10.1016/j.celrep.2024.114576},
   keywords = {II SUBUNIT RPB9; BOX RNA HELICASES; ARABIDOPSIS-THALIANA; POPULATION-STRUCTURE; CONDENSIN II; GENETIC DIFFERENTIATION; CENP-C; POLYPLOIDY; PROTEIN; BRASSICACEAE},
   language = {eng},
   issn = {2211-1247},
   journal = {Cell Reports},
   title = {Kinetochore and ionomic adaptation to whole-genome duplication in Cochlearia shows evolutionary convergence in three autopolyploids},
   url = {https://www.sciencedirect.com/science/article/pii/S2211124724009057?via%3Dihub},
   volume = {43},
   year = {2024}
}

TY  - JOUR
ID  - 2451677
AU  - Bray, Sian M. - Hamala, Tuomas - Zhou, Min - Busoms, Silvia - Fischer, Sina - Desjardins, Stuart D. - Malík Mandáková, Terezie - Moore, Chris - Mathers, Thomas C. - Cowan, Laura - Monnahan, Patrick - Koch, Jordan - Wolf, Eva M. - Lysák, Martin - Kolar, Filip - Higgins, James D. - Koch, Marcus A. - Yant, Levi
PY  - 2024
TI  - Kinetochore and ionomic adaptation to whole-genome duplication in Cochlearia shows evolutionary convergence in three autopolyploids
JF  - Cell Reports
VL  - 43
IS  - 8
SP  - 1-30
EP  - 1-30
PB  - Cell Press
SN  - 22111247
KW  - II SUBUNIT RPB9
KW  - BOX RNA HELICASES
KW  - ARABIDOPSIS-THALIANA
KW  - POPULATION-STRUCTURE
KW  - CONDENSIN II
KW  - GENETIC DIFFERENTIATION
KW  - CENP-C
KW  - POLYPLOIDY
KW  - PROTEIN
KW  - BRASSICACEAE
UR  - https://www.sciencedirect.com/science/article/pii/S2211124724009057?via%3Dihub
N2  - Whole-genome duplication (WGD) occurs in all kingdoms and impacts speciation, domestication, and cancer outcome. However, doubled DNA management can be challenging for nascent polyploids. The study of within-species polyploidy (autopolyploidy) permits focus on this DNA management aspect, decoupling it from the confounding effects of hybridization (in allopolyploid hybrids). How is autopolyploidy tolerated, and how do young polyploids stabilize? Here, we introduce a powerful model to address this: the genus Cochlearia, which has experienced many polyploidization events. We assess meiosis and other polyploidrelevant phenotypes, generate a chromosome-scale genome, and sequence 113 individuals from 33 ploidy-contrasting populations. We detect an obvious autopolyploidy-associated selection signal at kinetochore components and ion transporters. Modeling the selected alleles, we detail evidence of the kinetochore complex mediating adaptation to polyploidy. We compare candidates in independent autopolyploids across three genera separated by 40 million years, highlighting a common function at the process and gene levels, indicating evolutionary flexibility in response to polyploidy.
ER  -

BRAY, Sian M.; Tuomas HAMALA; Min ZHOU; Silvia BUSOMS; Sina FISCHER; Stuart D. DESJARDINS; Terezie MALÍK MANDÁKOVÁ; Chris MOORE; Thomas C. MATHERS; Laura COWAN; Patrick MONNAHAN; Jordan KOCH; Eva M. WOLF; Martin LYSÁK; Filip KOLAR; James D. HIGGINS; Marcus A. KOCH a Levi YANT. Kinetochore and ionomic adaptation to whole-genome duplication in Cochlearia shows evolutionary convergence in three autopolyploids. \textit{Cell Reports}. CAMBRIDGE: Cell Press, 2024, roč.~43, č.~8, s.~1-30. ISSN~2211-1247. Dostupné z: https://doi.org/10.1016/j.celrep.2024.114576.

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