Factors determining chromosomal localization of transposable
elements in plants

J 2025

Factors determining chromosomal localization of transposable elements in plants

KEJNOVSKÝ, Eduard; Pavel JEDLIČKA; Matej LEXA a Zdeněk KUBÁT

Základní údaje

Originální název

Factors determining chromosomal localization of transposable elements in plants

Autoři

KEJNOVSKÝ, Eduard; Pavel JEDLIČKA; Matej LEXA a Zdeněk KUBÁT

Vydání

PLANT BIOLOGY, Wiley and Sons Ltd. 2025, 1435-8603

Další údaje

Jazyk

angličtina

Typ výsledku

Článek v odborném periodiku

Obor

10602 Biology , Evolutionary biology

Stát vydavatele

Velká Británie a Severní Irsko

Utajení

není předmětem státního či obchodního tajemství

Odkazy

URL

Impakt faktor

Impact factor: 3.600 v roce 2024

Organizační jednotka

Fakulta informatiky

DOI

https://doi.org/10.1111/plb.70057

UT WoS

001498596900001

Klíčová slova anglicky

Centromere; chromosomes; plant genome; recombination; transcription factor; transposable elements

Štítky

transposable elements

Příznaky

Mezinárodní význam, Recenzováno

Změněno: 17. 9. 2025 13:40, doc. Ing. Matej Lexa, Ph.D.

Anotace

V originále

Transposable elements (TEs) constitute a significant part of plant genomes and shape their genomic landscape. While some TEs are ubiquitously dispersed, other elements specifically occupy discrete genomic loci. The evolutionary forces behind the chromosomal localization of TEs are poorly understood. Therefore, we first review specific chromosomal niches where TEs are often localized including (i) centromeres, (ii) (sub)telomeres, (iii) genes, and (iv) sex chromosomes. In the second part of this review, we focus on the processes standing behind nonequal distribution of various TEs in genomes including (i) purifying selection, (ii) insertion site preference or targeting of TEs, (iii) post-insertion ectopic recombination between TEs, and (iv) spatiotemporal regulation of TE jumping. Using the combination of the above processes, we explain the distribution of TEs on sex chromosomes. We also describe the phenomena of mutual nesting of TEs, epigenetic mark silencing in TEs, and TE interactions in the 3D interphase nucleus concerning TE localization. We summarize the functional consequences of TE distribution and relate them to cell functioning and genome evolution.

Návaznosti

CZ.02.01.01/00/22_008/0004581, interní kód MU

Název: Nové poznatky pro plodiny nové generace (TANGENC)

Investor: Ministerstvo školství, mládeže a tělovýchovy ČR, Nové poznatky pro plodiny nové generace (TANGENC), Priorita 1 - Výzkum a vývoj

GA21-00580S, projekt VaV

Název: Jak rostlinné transposony přispívají ke "genomové krajině" a organizaci interfázního jádra (Akronym: transpozony)

Investor: Grantová agentura ČR, Jak rostlinné transposony přispívají ke "genomové krajině" a organizaci interfázních jáder

GA24-11400S, projekt VaV

Název: Příčiny a důsledky evoluce frekvence rekombinace u eukaryotických linií lišících se typem chromozomů

Investor: Grantová agentura ČR, Příčiny a důsledky evoluce frekvence rekombinace u eukaryotických linií lišících se typem chromozomů

Citovat

KEJNOVSKÝ, Eduard; Pavel JEDLIČKA; Matej LEXA a Zdeněk KUBÁT. Factors determining chromosomal localization of transposable elements in plants. PLANT BIOLOGY. Wiley and Sons Ltd., 2025, roč. 2025, č. 1, s. 1-15. ISSN 1435-8603. Dostupné z: https://doi.org/10.1111/plb.70057.

@article{2500418,
   author = {Kejnovský, Eduard and Jedlička, Pavel and Lexa, Matej and Kubát, Zdeněk},
   article_number = {1},
   doi = {https://doi.org/10.1111/plb.70057},
   keywords = {Centromere; chromosomes; plant genome; recombination; transcription factor; transposable elements},
   language = {eng},
   issn = {1435-8603},
   journal = {PLANT BIOLOGY},
   title = {Factors determining chromosomal localization of transposable elements in plants},
   url = {https://onlinelibrary.wiley.com/doi/10.1111/plb.70057},
   volume = {2025},
   year = {2025}
}

TY  - JOUR
ID  - 2500418
AU  - Kejnovský, Eduard - Jedlička, Pavel - Lexa, Matej - Kubát, Zdeněk
PY  - 2025
TI  - Factors determining chromosomal localization of transposable elements in plants
JF  - PLANT BIOLOGY
VL  - 2025
IS  - 1
SP  - 1-15
EP  - 1-15
PB  - Wiley and Sons Ltd.
SN  - 14358603
KW  - Centromere
KW  - chromosomes
KW  - plant genome
KW  - recombination
KW  - transcription factor
KW  - transposable elements
UR  - https://onlinelibrary.wiley.com/doi/10.1111/plb.70057
N2  - Transposable elements (TEs) constitute a significant part of plant genomes and shape their genomic landscape. While some TEs are ubiquitously dispersed, other elements specifically occupy discrete genomic loci. The evolutionary forces behind the chromosomal localization of TEs are poorly understood. Therefore, we first review specific chromosomal niches where TEs are often localized including (i) centromeres, (ii) (sub)telomeres, (iii) genes, and (iv) sex chromosomes. In the second part of this review, we focus on the processes standing behind nonequal distribution of various TEs in genomes including (i) purifying selection, (ii) insertion site preference or targeting of TEs, (iii) post-insertion ectopic recombination between TEs, and (iv) spatiotemporal regulation of TE jumping. Using the combination of the above processes, we explain the distribution of TEs on sex chromosomes. We also describe the phenomena of mutual nesting of TEs, epigenetic mark silencing in TEs, and TE interactions in the 3D interphase nucleus concerning TE localization. We summarize the functional consequences of TE distribution and relate them to cell functioning and genome evolution.
ER  -

KEJNOVSKÝ, Eduard; Pavel JEDLIČKA; Matej LEXA a Zdeněk KUBÁT. Factors determining chromosomal localization of transposable elements in plants. \textit{PLANT BIOLOGY}. Wiley and Sons Ltd., 2025, roč.~2025, č.~1, s.~1-15. ISSN~1435-8603. Dostupné z: https://doi.org/10.1111/plb.70057.

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