High-resolution cytometry network project: Towards remote and
distributed acquisition, processing and visualisation of 3D
image data in human genome research

D 2002

High-resolution cytometry network project: Towards remote and distributed acquisition, processing and visualisation of 3D image data in human genome research

KOZUBEK, Michal, Petr MATULA, Pavel MATULA a Petr MEJZLÍK

Základní údaje

Originální název

High-resolution cytometry network project: Towards remote and distributed acquisition, processing and visualisation of 3D image data in human genome research

Autoři

KOZUBEK, Michal (203 Česká republika, garant), Petr MATULA (203 Česká republika), Pavel MATULA (203 Česká republika) a Petr MEJZLÍK (203 Česká republika)

Vydání

Los Alamitos, 3D data processing, visualization and transmission, s. 99-106, 2002

Nakladatel

IEEE Computer Society

Další údaje

Jazyk

angličtina

Typ výsledku

Stať ve sborníku

Obor

20200 2.2 Electrical engineering, Electronic engineering, Information engineering

Stát vydavatele

Spojené státy

Utajení

není předmětem státního či obchodního tajemství

Kód RIV

RIV/00216224:14330/02:00006217

Organizační jednotka

Fakulta informatiky

ISBN

0-7695-1521-5

UT WoS

000177028700017

Klíčová slova anglicky

automated microscopy; high-resolution cytometry; FISH imaging; interphase cell nuclei

Štítky

automated microscopy, FISH imaging, high-resolution cytometry, interphase cell nuclei

Příznaky

Mezinárodní význam, Recenzováno

Změněno: 7. 5. 2010 16:04, prof. RNDr. Michal Kozubek, Ph.D.

Anotace

V originále

The absence of common image storage, processing and visualisation approaches is a very serious problem of the collaboration between optical microscopy laboratories. The results produced by individual groups are therefore often not comparable. Even a simple visualisation of image data acquired in a different laboratory is often time-consuming because of the non-existence of a common 3D image file format. In this paper we present a solution to these problems for the specific task of acquisition, storage, processing and visualisation of 3D image data of fluorescently stained genetic material used in the research of the spatial organisation of human genome. We have developed a special software system based on the client/server architecture that enables the collaboration of laboratories active in this field. Each laboratory acquires the 3D image data using its own microscopes but stores them together with a detailed description of the samples on a central high-performance multi-processor UNIX server that acts as a file server, database server and image analysis server that accepts orders from individual clients.

Návaznosti

IBS5004010, projekt VaV

Název: Vývoj nových diagnostických technik pro onkologii

Investor: Akademie věd ČR, Vývoj nových diagnostických technik pro onkologii

MSM 143300002, záměr

Název: Využití počítačové analýzy obrazu v optické mikroskopii

Investor: Ministerstvo školství, mládeže a tělovýchovy ČR, Využití počítačové analýzy obrazu v optické mikroskopii

Citovat

KOZUBEK, Michal, Petr MATULA, Pavel MATULA a Petr MEJZLÍK. High-resolution cytometry network project: Towards remote and distributed acquisition, processing and visualisation of 3D image data in human genome research. In 3D data processing, visualization and transmission. Los Alamitos: IEEE Computer Society, 2002, s. 99-106. ISBN 0-7695-1521-5.

@inproceedings{404452,
   author = {Kozubek, Michal and Matula, Petr and Matula, Pavel and Mejzlík, Petr},
   address = {Los Alamitos},
   booktitle = {3D data processing, visualization and transmission},
   keywords = {automated microscopy; high-resolution cytometry; FISH imaging; interphase cell nuclei},
   language = {eng},
   location = {Los Alamitos},
   isbn = {0-7695-1521-5},
   pages = {99-106},
   publisher = {IEEE Computer Society},
   title = {High-resolution cytometry network project: Towards remote and distributed acquisition, processing and visualisation of 3D image data in human genome research},
   year = {2002}
}

TY  - JOUR
ID  - 404452
AU  - Kozubek, Michal - Matula, Petr - Matula, Pavel - Mejzlík, Petr
PY  - 2002
TI  - High-resolution cytometry network project: Towards remote and distributed acquisition, processing and visualisation of 3D image data in human genome research
PB  - IEEE Computer Society
CY  - Los Alamitos
SN  - 0769515215
KW  - automated microscopy
KW  - high-resolution cytometry
KW  - FISH imaging
KW  - interphase cell nuclei
N2  - The absence of common image storage, processing and visualisation approaches is a very serious problem of the collaboration between optical microscopy laboratories. The results produced by individual groups are therefore often not comparable. Even a simple visualisation of image data acquired in a different laboratory is often time-consuming because of the non-existence of a common 3D image file format. In this paper we present a solution to these problems for the specific task of acquisition, storage, processing and visualisation of 3D image data of fluorescently stained genetic material used in the research of the spatial organisation of human genome. We have developed a special software system based on the client/server architecture that enables the collaboration of laboratories active in this field. Each laboratory acquires the 3D image data using its own microscopes but stores them together with a detailed description of the samples on a central high-performance multi-processor UNIX server that acts as a file server, database server and image analysis server that accepts orders from individual clients.
ER  -

KOZUBEK, Michal, Petr MATULA, Pavel MATULA a Petr MEJZLÍK. High-resolution cytometry network project: Towards remote and distributed acquisition, processing and visualisation of 3D image data in human genome research. In \textit{3D data processing, visualization and transmission}. Los Alamitos: IEEE Computer Society, 2002, s.~99-106. ISBN~0-7695-1521-5.

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