Analysis of membrane proteome of Paracoccus denitrificans by
two-dimensional electrophoresis

D 2002

Analysis of membrane proteome of Paracoccus denitrificans by two-dimensional electrophoresis

BOUCHAL, Pavel a Igor KUČERA

Základní údaje

Originální název

Analysis of membrane proteome of Paracoccus denitrificans by two-dimensional electrophoresis

Autoři

BOUCHAL, Pavel (203 Česká republika) a Igor KUČERA (203 Česká republika, garant)

Vydání

Stará Lesná, XVIII. biochemický zjazd. Zborník. s. 160-160, 2002

Nakladatel

Slovenská spoločnosť pre biochémiu a molekulárnu biológiu pri SAV

Další údaje

Jazyk

angličtina

Typ výsledku

Stať ve sborníku

Obor

10600 1.6 Biological sciences

Stát vydavatele

Slovensko

Utajení

není předmětem státního či obchodního tajemství

Kód RIV

RIV/00216224:14310/02:00006413

Organizační jednotka

Přírodovědecká fakulta

Klíčová slova anglicky

Paracoccus denitrificans; membrane proteins; proteome; 2-D electrophoresis

Štítky

2-D electrophoresis, membrane proteins, Paracoccus denitrificans, proteome

Změněno: 24. 9. 2002 12:06, doc. Mgr. Pavel Bouchal, Ph.D.

Anotace

V originále

In facultative anaerobic bacterium P. denitrificans, a broad range of substrates can serve as carbon sources and terminal electrone acceptors. Successfull adaptation of this bacterium to altered conditions depends on expression of metabolically active proteins. For example, nitrate induces expression of some denitrification enzymes. Many important redox proteins are membrane-associated. For comprehensive study on changes of proteins level in this bacterium, we have optimized a method using two-dimensional electrophoresis (2-DE). Our work represents the first analysis of P. denitrificans proteome using 2-DE. Membrane suspension of anaerobically grown cells of Paracoccus denitrificans was prepared by combination of enzymatic and osmotic lysis, centrifugation and ulgtracentrifugation. We have tested various detergents and procedures for membrane proteins presolubilization (e.g., SDS, CHAPS, dodecyl-â-D-maltoside with 6-aminocaproic acid). Sample buffer and IEF gel composition effects on 2-D gel patterns were observed. Other parametres of 2-DE analysis were also optimized: conditions of final centrifugation, dilution ratio (presolubilized sample:sample buffer) and focusation conditions of carrier-ampholyte isoelectric focusation. 12% homogenous SDS-PAGE gel (16x20 cm) was used in the second-dimension. Using the optimized protocol, we have analyzed protein composition of membrane of P. denitrificans cells grown under aerobic and anaerobic conditions. 2-D gel patterns were compared using PDQUEST software. We have found 15 proteins significantly more expressed under anaerobic conditions a 5 proteins significantly more expressed under aerobic conditions. We have also sucessfully analyzed periplasmic proteins using this method.

Návaznosti

GA203/01/1589, projekt VaV

Název: Mechanizmy regulace respiračních systémů denitrifikačních bakterií faktory prostředí

Investor: Grantová agentura ČR, Mechanizmy regulace respiračních systémů denitrifikačních bakterií faktory prostředí

Citovat

BOUCHAL, Pavel a Igor KUČERA. Analysis of membrane proteome of Paracoccus denitrificans by two-dimensional electrophoresis. In XVIII. biochemický zjazd. Zborník. Stará Lesná: Slovenská spoločnosť pre biochémiu a molekulárnu biológiu pri SAV, 2002, s. 160.

@inproceedings{405321,
   author = {Bouchal, Pavel and Kučera, Igor},
   address = {Stará Lesná},
   booktitle = {XVIII. biochemický zjazd. Zborník.},
   keywords = {Paracoccus denitrificans; membrane proteins; proteome; 2-D electrophoresis},
   language = {eng},
   location = {Stará Lesná},
   pages = {160-160},
   publisher = {Slovenská spoločnosť pre biochémiu a molekulárnu biológiu pri SAV},
   title = {Analysis of membrane proteome of Paracoccus denitrificans by two-dimensional electrophoresis},
   year = {2002}
}

TY  - JOUR
ID  - 405321
AU  - Bouchal, Pavel - Kučera, Igor
PY  - 2002
TI  - Analysis of membrane proteome of Paracoccus denitrificans by two-dimensional electrophoresis
PB  - Slovenská spoločnosť pre biochémiu a molekulárnu biológiu pri SAV
CY  - Stará Lesná
KW  - Paracoccus denitrificans
KW  - membrane proteins
KW  - proteome
KW  - 2-D electrophoresis
N2  - In facultative anaerobic bacterium P. denitrificans, a broad range of substrates can serve as carbon sources and terminal electrone acceptors. Successfull adaptation of this bacterium to altered conditions depends on expression of metabolically active proteins. For example, nitrate induces expression of some denitrification enzymes. Many important redox proteins are membrane-associated. For comprehensive study on changes of proteins level in this bacterium, we have optimized a method using two-dimensional electrophoresis (2-DE). Our work represents the first analysis of P. denitrificans proteome using 2-DE. Membrane suspension of anaerobically grown cells of Paracoccus denitrificans was prepared by combination of enzymatic and osmotic lysis, centrifugation and ulgtracentrifugation. We have tested various detergents and procedures for membrane proteins presolubilization (e.g., SDS, CHAPS, dodecyl-â-D-maltoside with 6-aminocaproic acid). Sample buffer and IEF gel composition effects on 2-D gel patterns were observed. Other parametres of 2-DE analysis were also optimized: conditions of final centrifugation, dilution ratio (presolubilized sample:sample buffer) and focusation conditions of carrier-ampholyte isoelectric focusation. 12% homogenous SDS-PAGE gel (16x20 cm) was used in the second-dimension. Using the optimized protocol, we have analyzed protein composition of membrane of P. denitrificans cells grown under aerobic and anaerobic conditions. 2-D gel patterns were compared using PDQUEST software. We have found 15 proteins significantly more expressed under anaerobic conditions a 5 proteins significantly more expressed under aerobic conditions. We have also sucessfully analyzed periplasmic proteins using this method.
ER  -

BOUCHAL, Pavel a Igor KUČERA. Analysis of membrane proteome of Paracoccus denitrificans by two-dimensional electrophoresis. In \textit{XVIII. biochemický zjazd. Zborník.}. Stará Lesná: Slovenská spoločnosť pre biochémiu a molekulárnu biológiu pri SAV, 2002, s.~160.

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