PRIMEX: rapid identification of oligonucleotide matches in whole genomes

LEXA, Matej and Giorgio VALLE. PRIMEX: rapid identification of oligonucleotide matches in whole genomes. Bioinformatics. Oxford: Oxford University Press, 2003, vol. 19, No 18, p. 2486-2488. ISSN 1367-4803.

Basic information

Original name

PRIMEX: rapid identification of oligonucleotide matches in whole genomes

Authors

LEXA, Matej and Giorgio VALLE

Edition

Bioinformatics, Oxford, Oxford University Press, 2003, 1367-4803

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Other information

Language

English

Type of outcome

Článek v odborném periodiku

Field of Study

20206 Computer hardware and architecture

Confidentiality degree

není předmětem státního či obchodního tajemství

References:

Primex server

Impact factor

Impact factor: 6.701

Organization unit

Faculty of Informatics

UT WoS

000187217700025

Keywords in English

genomic; sequence; DNA; rapid search; inexact matches; mismatches; PCR primers

Tags

DNA, genomic, inexact matches, mismatches, PCR primers, rapid search, SEQUENCE

Tags

International impact, Reviewed

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Abstract

V originále

PRIMEX can detect oligonucleotide sequences in whole genomes, allowing for mismatches. Using a word lookup table and server functionality, PRIMEX accepts queries from client software and returns matches rapidly. We find it faster and more sensitive than currently available tools.