| BARNAT, Jiří, Luboš BRIM, Ivana ČERNÁ, Sven DRAŽAN, Jana FABRIKOVÁ, Jan LÁNÍK, David ŠAFRÁNEK a Ma HONGWU. BioDiVinE: A Framework for Parallel Analysis of Biological Models. In Proceedings of 2nd International Workshop on Computational Models for Cell Processes. Neuveden: EPTCS, 2009, s. 31-45. ISSN 2075-2180. |
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@inproceedings{850846,
author = {Barnat, Jiří and Brim, Luboš and Černá, Ivana and Dražan, Sven and Fabriková, Jana and Láník, Jan and Šafránek, David and Hongwu, Ma},
address = {Neuveden},
booktitle = {Proceedings of 2nd International Workshop on Computational Models for Cell Processes},
keywords = {model checking; multi-affine systems; dynamic systems; rectangular abstraction},
language = {eng},
location = {Neuveden},
pages = {31-45},
publisher = {EPTCS},
title = {BioDiVinE: A Framework for Parallel Analysis of Biological Models},
year = {2009}
}
TY - JOUR
ID - 850846
AU - Barnat, Jiří - Brim, Luboš - Černá, Ivana - Dražan, Sven - Fabriková, Jana - Láník, Jan - Šafránek, David - Hongwu, Ma
PY - 2009
TI - BioDiVinE: A Framework for Parallel Analysis of Biological Models
PB - EPTCS
CY - Neuveden
KW - model checking
KW - multi-affine systems
KW - dynamic systems
KW - rectangular abstraction
N2 - In this paper a novel tool BioDiVinE for parallel analysis of biological models is presented. The tool allows analysis of biological models specified in terms of a set of chemical reactions. Chemical reactions are transformed into a system of multi-affine differential equations. BioDiVinE employs techniques for finite discrete abstraction of the continuous state space. At that level, parallel analysis algorithms based on model checking are provided. In the paper, the key tool features are described and their application is demonstrated by means of a case study.
ER -
BARNAT, Jiří, Luboš BRIM, Ivana ČERNÁ, Sven DRAŽAN, Jana FABRIKOVÁ, Jan LÁNÍK, David ŠAFRÁNEK a Ma HONGWU. BioDiVinE: A Framework for Parallel Analysis of Biological Models. In \textit{Proceedings of 2nd International Workshop on Computational Models for Cell Processes}. Neuveden: EPTCS, 2009, s.~31-45. ISSN~2075-2180.
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