Generation of 3D Digital Phantoms of Colon Tissue

D 2011

Generation of 3D Digital Phantoms of Colon Tissue

SVOBODA, David, Ondřej HOMOLA a Stanislav STEJSKAL

Základní údaje

Originální název

Generation of 3D Digital Phantoms of Colon Tissue

Autoři

SVOBODA, David (203 Česká republika, garant, domácí), Ondřej HOMOLA (203 Česká republika, domácí) a Stanislav STEJSKAL (203 Česká republika, domácí)

Vydání

LNCS 6754, Part II. Berlin, Heidelberg, Proceedings of 8th International Conference on Image Analysis and Recognition, od s. 31-39, 9 s. 2011

Nakladatel

Springer-Verlag

Další údaje

Jazyk

angličtina

Typ výsledku

Stať ve sborníku

Obor

20200 2.2 Electrical engineering, Electronic engineering, Information engineering

Stát vydavatele

Kanada

Utajení

není předmětem státního či obchodního tajemství

Forma vydání

tištěná verze "print"

Impakt faktor

Impact factor: 0.402 v roce 2005

Kód RIV

RIV/00216224:14330/11:00067276

Organizační jednotka

Fakulta informatiky

ISBN

978-3-642-21595-7

ISSN

DOI

http://dx.doi.org/10.1007/978-3-642-21596-4_4

UT WoS

000300562000004

Klíčová slova anglicky

Digital phantom; Colon tissue; Simulation; Haralick texture features

Štítky

cbia-web

Příznaky

Mezinárodní význam, Recenzováno

Změněno: 30. 4. 2014 04:00, RNDr. Pavel Šmerk, Ph.D.

Anotace

V originále

Although segmentation of biomedical image data has been paid a lot of attention for many years, this crucial task still meets the problem of the correctness of the obtained results. Especially in the case of optical microscopy, the ground truth (GT), which is a very important tool for the validation of image processing algorithms, is not available. We have developed a toolkit that generates fully 3D digital phantoms, that represent the structure of the studied biological objects. While former papers concentrated on the modelling of isolated cells (such as blood cells), this work focuses on a representative of tissue image type, namely human colon tissue. This phantom image can be submitted to the engine that simulates the image acquisition process. Such synthetic image can be further processed, e.g. deconvolved or segmented. The results can be compared with the GT derived from the digital phantom and the quality of the applied algorithm can be measured.

Návaznosti

LC535, projekt VaV

Název: Dynamika a organizace chromosomů během buněčného cyklu v normě a patologii

Investor: Ministerstvo školství, mládeže a tělovýchovy ČR, Dynamika a organizace chromosomů během buněčného cyklu v normě a patologii

2B06052, projekt VaV

Název: Vytipování markerů, screening a časná diagnostika nádorových onemocnění pomocí vysoce automatizovaného zpracování multidimenzionálních biomedicínských obrazů (Akronym: Biomarker)

Investor: Ministerstvo školství, mládeže a tělovýchovy ČR, Vytipování markerů, screening a časná diagnostika nádorových onemocnění pomocí vysoce automatizovaného zpracování multidimenzionálních biomedicínských obrazů

Citovat

SVOBODA, David, Ondřej HOMOLA a Stanislav STEJSKAL. Generation of 3D Digital Phantoms of Colon Tissue. In M. Kamel and A. Campilho. Proceedings of 8th International Conference on Image Analysis and Recognition. LNCS 6754, Part II. Berlin, Heidelberg: Springer-Verlag, 2011, s. 31-39. ISBN 978-3-642-21595-7. Dostupné z: https://dx.doi.org/10.1007/978-3-642-21596-4_4.

@inproceedings{936280,
   author = {Svoboda, David and Homola, Ondřej and Stejskal, Stanislav},
   address = {Berlin, Heidelberg},
   booktitle = {Proceedings of 8th International Conference on Image Analysis and Recognition},
   doi = {http://dx.doi.org/10.1007/978-3-642-21596-4_4},
   edition = {LNCS 6754, Part II},
   editor = {M. Kamel and A. Campilho},
   keywords = {Digital phantom; Colon tissue; Simulation; Haralick texture features},
   howpublished = {tištěná verze "print"},
   language = {eng},
   location = {Berlin, Heidelberg},
   isbn = {978-3-642-21595-7},
   pages = {31-39},
   publisher = {Springer-Verlag},
   title = {Generation of 3D Digital Phantoms of Colon Tissue},
   year = {2011}
}

TY  - JOUR
ID  - 936280
AU  - Svoboda, David - Homola, Ondřej - Stejskal, Stanislav
PY  - 2011
TI  - Generation of 3D Digital Phantoms of Colon Tissue
PB  - Springer-Verlag
CY  - Berlin, Heidelberg
SN  - 9783642215957
KW  - Digital phantom
KW  - Colon tissue
KW  - Simulation
KW  - Haralick texture features
N2  - Although segmentation of biomedical image data has been paid a lot of attention for many years, this crucial task still meets the problem of the correctness of the obtained results. Especially in the case of optical microscopy, the ground truth (GT), which is a very important tool for the validation of image processing algorithms, is not available. We have developed a toolkit that generates fully 3D digital phantoms, that represent the structure of the studied biological objects. While former papers concentrated on the modelling of isolated cells (such as blood cells), this work focuses on a representative of tissue image type, namely human colon tissue. This phantom image can be submitted to the engine that simulates the image acquisition process. Such synthetic image can be further processed, e.g. deconvolved or segmented. The results can be compared with the GT derived from the digital phantom and the quality of the applied algorithm can be measured.
ER  -

SVOBODA, David, Ondřej HOMOLA a Stanislav STEJSKAL. Generation of 3D Digital Phantoms of Colon Tissue. In M. Kamel and A. Campilho. \textit{Proceedings of 8th International Conference on Image Analysis and Recognition}. LNCS 6754, Part II. Berlin, Heidelberg: Springer-Verlag, 2011, s.~31-39. ISBN~978-3-642-21595-7. Dostupné z: https://dx.doi.org/10.1007/978-3-642-21596-4\_{}4.

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